orger-lab / megaboutsLinks
A flexible pipeline for analyzing zebrafish locomotion
☆12Updated last month
Alternatives and similar repositories for megabouts
Users that are interested in megabouts are comparing it to the libraries listed below
Sorting:
- Mix-and-match computer vision tools for your animal behaviour analysis☆18Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated last week
- ☆10Updated 2 years ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- General information, resources and dicussions for the BrainGlobe project.☆11Updated 4 months ago
- Build unbiased anatomical templates from individual images☆11Updated last week
- Python package for streaming video from multiple cameras to disk. Features real-time compression and debayering using FFmpeg.☆46Updated 10 months ago
- A package to manage electrophysiology analysis.☆23Updated this week
- Re-usable GitHub Action scripts☆10Updated last week
- Anatomical space conventions made easy.☆10Updated last week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated last month
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆56Updated 6 months ago
- LISBET Is a Social BEhavior Transformer (LISBET)☆12Updated 3 weeks ago
- A repository for our participation in Google Summer of Code☆12Updated 3 months ago
- Quantify user-defined behaviors.☆79Updated last week
- Fast, volumetric cell detection. In development.☆18Updated last month
- Tools for machine learning of animal behavior☆14Updated last year
- Fancier logging with python.☆12Updated last week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆19Updated 2 weeks ago
- NIU website on common software problems and their troubleshooting☆10Updated 2 weeks ago
- Behavior Classifier Component from the Jax Animal Behavior System☆17Updated this week
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 9 months ago
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 4 years ago
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆20Updated 9 months ago
- Napari plugin for working with video files.☆12Updated 2 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆55Updated this week
- pipeline for volumetric cell segmentation☆12Updated this week
- Standalone utilities for SLEAP pose tracking data.☆16Updated this week
- miniscope analysis pipeline with interactive visualizations☆94Updated last year
- DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.☆25Updated last year