orger-lab / megaboutsLinks
A flexible pipeline for analyzing zebrafish locomotion
☆12Updated 6 months ago
Alternatives and similar repositories for megabouts
Users that are interested in megabouts are comparing it to the libraries listed below
Sorting:
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated 2 years ago
- ☆10Updated 2 years ago
- Python package for streaming video from multiple cameras to disk. Features real-time compression and debayering using FFmpeg.☆47Updated 2 weeks ago
- A package to manage electrophysiology analysis.☆22Updated last week
- Re-usable GitHub Action scripts☆13Updated this week
- Fancier logging with python.☆14Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated last week
- Anatomical space conventions made easy.☆12Updated last week
- Mix-and-match computer vision tools for your animal behaviour analysis☆21Updated last week
- Behavior Classifier Component from the Jax Animal Behavior System☆19Updated this week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆19Updated last week
- General information, resources and dicussions for the BrainGlobe project.☆11Updated 9 months ago
- A repository for our participation in Google Summer of Code☆13Updated 7 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated 2 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated last week
- NIU website on common software problems and their troubleshooting☆10Updated 2 weeks ago
- Fast, volumetric cell detection. In development.☆20Updated last month
- DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.☆13Updated last week
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 5 years ago
- LISBET Is a Social BEhavior Transformer (LISBET)☆12Updated last week
- pipeline for volumetric cell segmentation☆13Updated last week
- Napari plugin for working with video files.☆13Updated 3 months ago
- Brainways☆22Updated 3 months ago
- Utility to create a basic Python project structure with tests, CI etc.☆34Updated last week
- ☆52Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated last week
- Collection of probe description for probeinterface☆17Updated last month
- Build unbiased anatomical templates from individual images☆12Updated this week
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆27Updated last year