orger-lab / megaboutsLinks
A flexible pipeline for analyzing zebrafish locomotion
☆12Updated 8 months ago
Alternatives and similar repositories for megabouts
Users that are interested in megabouts are comparing it to the libraries listed below
Sorting:
- Mix-and-match computer vision tools for your animal behaviour analysis☆23Updated last week
- Python package for streaming video from multiple cameras to disk. Features real-time compression and debayering using FFmpeg.☆49Updated 3 weeks ago
- Re-usable GitHub Action scripts☆14Updated last week
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated 2 years ago
- A package to manage electrophysiology analysis.☆22Updated last week
- ☆10Updated 2 years ago
- Behavior Classifier Component from the Jax Animal Behavior System☆19Updated last week
- Anatomical space conventions made easy.☆12Updated 3 weeks ago
- Standalone utilities for SLEAP pose tracking data.☆21Updated last week
- General information, resources and dicussions for the BrainGlobe project.☆11Updated 11 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 3 weeks ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆20Updated last month
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 5 years ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated this week
- NIU website on common software problems and their troubleshooting☆10Updated 2 months ago
- ☆101Updated 3 months ago
- Napari plugin for working with video files.☆13Updated 5 months ago
- LISBET Is a Social BEhavior Transformer (LISBET)☆12Updated this week
- ☆12Updated last week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 4 months ago
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆27Updated last year
- Fancier logging with python.☆16Updated last week
- A repository for our participation in Google Summer of Code☆13Updated 9 months ago
- DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.☆13Updated 2 weeks ago
- Ensembling and kalman smoothing for pose estimation☆31Updated last month
- Fast, volumetric cell detection. In development.☆22Updated last week
- NWB extension to store pose estimation data☆17Updated 7 months ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆39Updated 4 months ago
- Deep Imputation for Skeleton data☆26Updated last week
- Utility to create a basic Python project structure with tests, CI etc.☆35Updated 3 weeks ago