YerevaNN / BioRelEx
🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019
☆19Updated 5 years ago
Alternatives and similar repositories for BioRelEx:
Users that are interested in BioRelEx are comparing it to the libraries listed below
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- ☆24Updated 3 years ago
- Bio relation extraction labeled dataset☆43Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 2 years ago
- FOBIE dataset and code for Semi-Open Relation Extraction, applied to Biology for Computer-Aided Biomimetics.☆35Updated 4 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Repository used to collect biomedical corpus on the Internet!☆32Updated 4 years ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- Codes for the EMNLP'2020 paper "Predicting Clinical Trial Results by Implicit Evidence Integration".☆14Updated 4 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆33Updated last year
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆133Updated 6 months ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41Updated 4 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆55Updated last year
- Using pretrained language models for biomedical knowledge graph completion.☆46Updated 3 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.☆63Updated 8 months ago
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…☆37Updated 5 years ago
- ☆31Updated 11 months ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆162Updated last year
- CPI Extraction☆9Updated 2 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆54Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 9 months ago
- ☆26Updated last year