rahuln / lm-bio-kgc
Using pretrained language models for biomedical knowledge graph completion.
☆46Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for lm-bio-kgc
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆54Updated last year
- Multimodal Transformers for biomedical text and Knowledge Graph data☆32Updated last year
- Bio relation extraction labeled dataset☆42Updated 2 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated last year
- ☆28Updated last year
- BioELECTRA☆51Updated 3 years ago
- ☆24Updated 3 years ago
- A set of benchmark repositories for node classification on knowledge graphs. To use, see https://github.com/pbloem/kgbench-loader☆24Updated last year
- Extracting Summary Knowledge Graphs from Long Documents☆18Updated 3 years ago
- Entity Linking & discovery solution. Agarwal et al., "Entity Linking via Explicit Mention-Mention Coreference Modeling", NAACL 2022.☆25Updated 6 months ago
- Codes for paper: Mixture-of-Partitions: Infusing Large Biomedical Knowledge Graphs into BERT☆31Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆47Updated 6 months ago
- Tutorial and hands-on notebook on using the Knowledge Graph Toolkit (KGTK)☆78Updated 2 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated 11 months ago
- ☆20Updated 3 years ago
- Code to train open knowledge graph embeddings and to create a benchmark for open link prediction.☆25Updated last year
- 🏅 KG Inductive Link Prediction Challenge (ILPC) 2022☆82Updated 2 years ago
- "Inductive Entity Representations from Text via Link Prediction" @ The Web Conference 2021☆58Updated last year
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆45Updated 3 years ago
- A tool for taxonomy construction using Graph Neural Networks (GNN).☆27Updated 2 months ago
- Scalable and fast non-redundant rule application for link prediction☆44Updated 2 months ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆33Updated 9 months ago
- The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.☆60Updated 5 months ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆26Updated last year
- Embeddings for ontologies in the Description Logic EL++☆25Updated last year
- MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)☆16Updated 2 years ago
- ☆32Updated 6 years ago
- ☆26Updated last year
- Drug repurposing for COVID-19 using literature-based discovery☆27Updated 2 years ago
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆35Updated 2 years ago