Alternatives and similar repositories for omniplot

Users that are interested in omniplot are comparing it to the libraries listed below

• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆61Updated 2 weeks ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆36Updated last year
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆25Updated 2 years ago
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆36Updated last month
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 6 months ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆61Updated 2 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆34Updated 8 months ago
• viash-io / viash
  script + metadata = standalone component
  ☆44Updated last week
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆40Updated 3 weeks ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 6 months ago
• koonimaru / radialtree
  A python module to draw a circular dendrogram
  ☆22Updated last year
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆66Updated 4 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆26Updated last year
• kpj / rwrap
  Seamlessly integrate R packages into Python.
  ☆21Updated 2 years ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆61Updated last month
• FoxoTech / methylprep
  Python-based preprocessing software for Illumina methylation arrays
  ☆42Updated 2 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆57Updated 6 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆63Updated last year
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆39Updated last month
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆54Updated last month
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• mragsac / BISB-Bootcamp-2021
  FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
  ☆19Updated 4 years ago
• devCellPy-Team / devCellPy
  devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
  ☆27Updated last year
• nf-core / spatialvi
  Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…
  ☆68Updated 2 weeks ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆53Updated this week
• aertslab / pycistarget
  pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …
  ☆18Updated 10 months ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated last year
• mpg-age-bioinformatics / AGEpy
  Bioinformatics tools for Python
  ☆25Updated 2 weeks ago
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆32Updated 6 months ago