Alternatives and similar repositories for SanPy

Users that are interested in SanPy are comparing it to the libraries listed below

• Whitlock-Group / HERBS
  ☆51Updated 9 months ago
• losonczylab / sima
  Python package for analysis of dynamic fluorescence microscopy data
  ☆100Updated 6 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• petersaj / AP_histology
  Histology processing
  ☆65Updated last month
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆150Updated this week
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 3 months ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆57Updated 2 weeks ago
• INM-6 / viziphant
  Visualization of electrophysiological data from Elephant
  ☆24Updated 7 months ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated last year
• AllenInstitute / ipfx
  computes intrinsic cell features from intracellular electrophysiology data
  ☆27Updated 7 months ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆59Updated this week
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• MetaCell / nwb-explorer
  NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
  ☆24Updated this week
• cortex-lab / Rigbox
  A MATLAB toolbox for running behavioral neuroscience experiments and managing data
  ☆33Updated last year
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆12Updated 2 months ago
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆25Updated 3 months ago
• AllenInstitute / drcme
  Dimensionality-reduction and classification for morphology and electrophysiology
  ☆13Updated 8 months ago
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆74Updated 3 months ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆41Updated this week
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆26Updated 3 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆15Updated 2 years ago
• JingyiGF / HERBS
  ☆19Updated last year
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆54Updated last month
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 8 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆67Updated last week
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆102Updated 5 months ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆96Updated last month
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆74Updated last month