Reed-CompBio / spras
Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)
☆13Updated 3 weeks ago
Alternatives and similar repositories for spras:
Users that are interested in spras are comparing it to the libraries listed below
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆13Updated last week
- Useful scripts and tools related to alevin-fry☆9Updated 2 years ago
- Short course using RStudio for biological data analysis☆14Updated 2 years ago
- HPC and queue usage class syllabus☆16Updated 3 years ago
- Extension of SpatialExperiment with sf☆47Updated last week
- ☆12Updated 4 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆26Updated last year
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated last year
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆22Updated 2 weeks ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆17Updated last year
- R package for metabolic enzyme enrichment anaylsis☆12Updated 3 months ago
- Exploring Isoform-specific interactions☆10Updated 3 weeks ago
- All the fun and adventure of MHC naming, now in Python☆10Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 3 months ago
- Code used for mouse single cell RNAseq testis atlas☆12Updated 4 years ago
- piano - An R/Bioconductor package for gene set analysis☆13Updated 2 years ago
- R interface to genome annotation files and the UCSC genome browser☆30Updated this week
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.☆24Updated last year
- Toolbox package for organizing and working with TCGA data☆26Updated 2 months ago
- Utilities for manipulating chromosome names, including modifying them to follow a particular naming style☆32Updated 3 weeks ago
- Differential expression and allelic analysis, nonparametric statistics☆28Updated last month
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Build and maintain multiple custom conda environments all in one place.☆37Updated 2 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆18Updated 2 weeks ago
- ☆15Updated 3 years ago
- Full annotation using shape-constrained trees☆25Updated last year
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆13Updated last year