Reed-CompBio / spras
Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)
☆12Updated last month
Alternatives and similar repositories for spras:
Users that are interested in spras are comparing it to the libraries listed below
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆13Updated last week
- single-cell decorrelated module networks☆20Updated 4 months ago
- Short course using RStudio for biological data analysis☆14Updated 2 years ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 2 years ago
- Utilities for manipulating chromosome names, including modifying them to follow a particular naming style☆32Updated last month
- Multi-omics data normalisation, model fitting and visualisation.☆24Updated last year
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆26Updated this week
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆25Updated last year
- Universal RObust Peak Annotator☆15Updated last year
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆31Updated 6 months ago
- Interactive TooManyCells Trees☆12Updated last month
- Full annotation using shape-constrained trees☆25Updated last year
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆16Updated 7 months ago
- ☆16Updated 4 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated last year
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- Exploring Isoform-specific interactions☆11Updated 3 months ago
- Code used for mouse single cell RNAseq testis atlas☆12Updated 4 years ago
- Microbiome Analysis Plotting and Visualization☆10Updated this week
- ☆27Updated this week
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆13Updated last year
- R package for differential discovery analyses in high-dimensional cytometry data☆19Updated 10 months ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 4 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆10Updated 6 years ago
- Single sample pathway analysis tools for omics data☆12Updated 2 months ago
- R interface to genome annotation files and the UCSC genome browser☆29Updated this week
- ☆16Updated last week