This repository contains the package SpatialFusion, a deep-learning multimodal model for niche discovery in spatial transcritomics and histopathological data.
☆42Aug 27, 2026Updated 3 weeks ago
Alternatives and similar repositories for spatialfusion
Users that are interested in spatialfusion are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to predict off-target binding via probe sequences☆16Mar 13, 2026Updated 6 months ago
- Interactive spatial transcriptomics viewer for h5ad files☆16Mar 14, 2026Updated 6 months ago
- ☆17Mar 10, 2026Updated 6 months ago
- Fine-grained Spatial Transcriptomics by integrating paired histology image☆35Aug 7, 2026Updated last month
- [GreenJournal2023] Deep learning-based accurate delineation of primary gross tumor volume of nasopharyngeal carcinoma on heterogeneous ma…☆12Feb 6, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Function to de-identify the face of patients in head CTs☆10Aug 1, 2024Updated 2 years ago
- Demographic bias in misdiagnosis by computational pathology models - Nature Medicine☆16Apr 29, 2024Updated 2 years ago
- ☆14Dec 22, 2025Updated 8 months ago
- ☆14Apr 4, 2023Updated 3 years ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 11 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- End-to-end analysis of spatial multi-omics data☆125Updated this week
- A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.☆17Aug 3, 2026Updated last month
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆22Jul 21, 2025Updated last year
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 5 months ago
- [Nature Biomedical Engineering]This is the official code repo for the paper: spEMO: Exploring the Capacity of Foundation Models for Analy…☆22May 9, 2026Updated 4 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆37Sep 21, 2021Updated 4 years ago
- Pathology Foundation Model - Nature Medicine☆780Mar 26, 2025Updated last year
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- ☆16Oct 29, 2025Updated 10 months ago
- ☆24Jan 10, 2025Updated last year
- Ensemble Learning of Foundation Models☆22Aug 20, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cell-specific Network Constructed by Single-cell RNA Sequencing Data☆23Dec 15, 2018Updated 7 years ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆35Nov 30, 2023Updated 2 years ago
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆54Sep 4, 2026Updated 2 weeks ago
- Spatial Expression-Aligned Learning to improve pathology foundation models☆49Feb 17, 2026Updated 7 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆189Sep 4, 2026Updated 2 weeks ago
- A chromosome-level polyploid phasing scaffolding tool☆19Aug 27, 2026Updated 3 weeks ago
- Cross-attention-based cell-cell interaction inference from ST data.☆22Jul 31, 2026Updated last month
- Subtyping tool for multi-omic data☆14Jul 6, 2022Updated 4 years ago
- ☆67Sep 9, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Updated this week
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆152Sep 7, 2026Updated last week
- ☆12May 16, 2019Updated 7 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆67Apr 14, 2024Updated 2 years ago
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 9 years ago
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆16Apr 30, 2026Updated 4 months ago
- Analysis of co-fractionation MS datasets☆13Dec 7, 2021Updated 4 years ago