3mcloud / MDACE
The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinical records. We believe that the release of MDACE will greatly improve the understanding and application of deep learning technologies for medical coding, and benefit machine learning models for classification.
☆28Updated last year
Alternatives and similar repositories for MDACE:
Users that are interested in MDACE are comparing it to the libraries listed below
- auto icd coding with prompt☆49Updated 11 months ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago
- ☆36Updated last year
- ☆80Updated 7 months ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆104Updated 7 months ago
- A collection of papers on automated medical coding from free-texts☆137Updated 3 months ago
- Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system☆26Updated last year
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆65Updated last year
- ☆59Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 5 months ago
- Code for "A Data-Centric Approach To Generate Faithful and High Quality Patient Summaries with Large Language Models"☆13Updated 7 months ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆93Updated 8 months ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- General tutorials for the setup and use of MedCAT.☆37Updated 3 months ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 10 months ago
- Transformers for Clinical NLP☆24Updated 2 months ago
- ☆29Updated 3 years ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆94Updated last year
- ☆38Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated this week
- ☆98Updated 3 years ago
- [NeurIPS'22] EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records☆78Updated 4 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆44Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated 11 months ago
- Blog post on Medium☆49Updated 2 years ago
- PMC-Patients☆92Updated 10 months ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆65Updated last year
- A new collection of 1.7k doctor-patient conversations and corresponding clinical notes/summaries.☆71Updated last year