allenai / BEEP
Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system
☆26Updated last year
Alternatives and similar repositories for BEEP:
Users that are interested in BEEP are comparing it to the libraries listed below
- ☆38Updated 2 years ago
- auto icd coding with prompt☆47Updated 8 months ago
- ☆57Updated last year
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆55Updated last year
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆89Updated 5 months ago
- BioELECTRA☆51Updated 3 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆158Updated 3 years ago
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆17Updated 10 months ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆24Updated last year
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆35Updated last year
- Code for the emrQA question answering dataset☆144Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 9 months ago
- Dataset for medical question summarization introduced in the ACL 2019 paper "On the Summarization of Consumer Health Questions" (A. Ben A…☆29Updated 2 years ago
- In-BoXBART: Get Instructions into Biomedical Multi-task Learning☆14Updated 2 years ago
- ☆17Updated 2 years ago
- ☆96Updated 2 years ago
- ☆48Updated 3 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Updated 11 months ago
- Code for "A Data-Centric Approach To Generate Faithful and High Quality Patient Summaries with Large Language Models"☆12Updated 5 months ago
- MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)☆17Updated 2 years ago
- MEDIQA-Chat Shared Tasks @ ACL-ClinicalNLP 2023☆48Updated last year
- [NeurIPS'22] EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records☆75Updated 2 months ago
- ☆65Updated 2 years ago
- Pre-trained word embeddings using the text of published clinical case reports.☆14Updated 5 years ago
- UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge☆12Updated last year
- Dataset for the NLPMC @ NAACL 2021 Paper: Assertion Detection in Clinical Notes: Medical Language Models to the Rescue?☆14Updated 3 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- Code for the paper "Clinical Reading Comprehension: A Thorough Analysis of the emrQA Dataset" (ACL 2020)☆17Updated 4 years ago