Alternatives and similar repositories for PLM-ICD

Users that are interested in PLM-ICD are comparing it to the libraries listed below

• acadTags / Awesome-medical-coding-NLP
  A collection of papers on automated medical coding from free-texts
  ☆148Updated 10 months ago
• GanjinZero / ICD-MSMN
  Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]
  ☆53Updated 3 years ago
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆124Updated last year
• 3mcloud / MDACE
  The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…
  ☆29Updated 2 years ago
• zhao-zy15 / PMC-Patients
  PMC-Patients
  ☆101Updated last year
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆83Updated 5 months ago
• luoyuanlab / Clinical-Longformer
  ☆63Updated 2 years ago
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆154Updated 2 years ago
• StanfordMIMI / clin-summ
  Clinical text summarization by adapting large language models
  ☆149Updated last year
• JoakimEdin / medical-coding-reproducibility
  ☆89Updated last year
• whaleloops / KEPT
  auto icd coding with prompt
  ☆49Updated last year
• starmpcc / Asclepius
  Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"
  ☆109Updated last year
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆79Updated 3 years ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆40Updated 5 months ago
• bvanaken / clinical-outcome-prediction
  Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration
  ☆95Updated last year
• pmc-patients / pmc-patients
  PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…
  ☆70Updated last year
• suamin / ICD-BERT
  ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)
  ☆77Updated 2 years ago
• abachaa / MTS-Dialog
  A new collection of 1.7k doctor-patient conversations and corresponding clinical notes/summaries.
  ☆96Updated 4 months ago
• ncbi / MedCPT
  Code for MedCPT, a model for zero-shot biomedical information retrieval.
  ☆210Updated last year
• dreji18 / Bio-Epidemiology-NER
  Recognize bio-medical entities from a text corpus
  ☆128Updated 2 years ago
• abachaa / MEDIQA-Chat-2023
  MEDIQA-Chat Shared Tasks @ ACL-ClinicalNLP 2023
  ☆50Updated 2 years ago
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆307Updated last year
• Machine-Learning-for-Medical-Language / cnlp_transformers
  Transformers for Clinical NLP
  ☆25Updated 2 months ago
• glee4810 / EHRSQL
  [NeurIPS'22] EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records
  ☆91Updated 11 months ago
• bigscience-workshop / biomedical
  Tools for curating biomedical training data for large-scale language modeling
  ☆485Updated 10 months ago
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆29Updated last year
• Andy-jqa / biomedical-qa-datasets
  Biomedical Question Answering Datasets.
  ☆115Updated 5 months ago
• qingyu-qc / gpt_bionlp_benchmark
  ☆25Updated last year
• pubmedqa / pubmedqa
  PubMedQA: A Dataset for Biomedical Research Question Answering
  ☆372Updated 2 years ago
• gmichalo / UmlsBERT
  ☆100Updated 3 years ago