JamesJeffryes / pyclassyfire
A python client for the ClassyFire API
☆16Updated 4 years ago
Alternatives and similar repositories for pyclassyfire:
Users that are interested in pyclassyfire are comparing it to the libraries listed below
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆60Updated 3 weeks ago
- ☆24Updated last year
- ☆32Updated 3 months ago
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆29Updated this week
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆54Updated 9 months ago
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆18Updated last week
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆28Updated 3 months ago
- ☆21Updated 6 months ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆21Updated 2 weeks ago
- ☆62Updated 7 months ago
- a python package for molecular formula analysis in MS-based small molecule studies☆25Updated last month
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆43Updated last week
- ☆32Updated 3 weeks ago
- Efficiently predicting high resolution mass spectra with graph neural networks☆26Updated last year
- Prediction of metabolites formed by phase I and phase II xenobiotic metabolism.☆13Updated 2 years ago
- Predicting tandem mass spectra from molecules☆88Updated last year
- ☆22Updated last year
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆61Updated last week
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆20Updated 2 months ago
- ☆17Updated 10 months ago
- ☆8Updated 9 months ago
- A tool to convert IUPAC representations of glycans into SMILES strings.☆12Updated last month
- A small library to provide peak picking for software processing mass spectrometry data☆21Updated 3 months ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆43Updated 3 months ago
- DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)☆29Updated last week
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆15Updated 5 months ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆68Updated 7 months ago
- ☆16Updated last month
- Bioinformatics and Cheminformatics protocols for peptide analysis☆41Updated 2 years ago
- Predicting glycan structure from LC-MS/MS data☆24Updated 2 weeks ago