hj-n / zadu
A Python Library for Evaluating the Reliability of Dimensionality Reduction Embeddings
☆36Updated 6 months ago
Alternatives and similar repositories for zadu:
Users that are interested in zadu are comparing it to the libraries listed below
- Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)☆107Updated 4 months ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆43Updated 5 months ago
- Simple method to create notebook-ready visual analytics tools!☆30Updated last year
- ccPCA: contrasting clusters in PCA.☆20Updated 11 months ago
- Progressive Uniform Manifold Approximation and Projection (EuroVis 2020 short)☆12Updated 2 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆68Updated 2 years ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- A spectral method for assessing and combining multiple data visualizations☆49Updated last year
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆21Updated 6 months ago
- NetworkX-based Python library for representing ontologies☆88Updated last year
- A Python toolkit for biomedical data integration and harmonization☆10Updated this week
- Contrastive neighbor embeddings☆54Updated last month
- Source codes and materials for "Disentangled Representation of Data Distributions in Scatterplots"☆8Updated 5 years ago
- ☆61Updated 3 months ago
- Interactive Jupyter notebook widget for visually comparing embedding spaces.☆110Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated 10 months ago
- Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep…☆150Updated 4 years ago
- Benchmark for LLM-based Agents in Computational Biology☆34Updated 3 weeks ago
- Genie: Fast and Robust Hierarchical Clustering with Noise Point Detection - in Python and R☆61Updated this week
- Hierarchical graph clustering☆38Updated 6 years ago
- ☆17Updated 4 months ago
- Visual Learning of Graph Neural Networks in Your Web Browser☆23Updated last month
- ☆23Updated 3 years ago
- Interactive & explainable GNN for drug repurposing☆12Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.☆25Updated 2 years ago
- A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec☆161Updated 2 months ago
- Template for creating a BioCypher-driven knowledge graph☆12Updated 4 months ago
- A simple implementation of UMAP, TSNE and GDR across frameworks and libraries☆13Updated 4 months ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆60Updated last year
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆148Updated 3 years ago