hj-n / zaduLinks
A Python Library for Evaluating the Reliability of Dimensionality Reduction Embeddings
☆40Updated 3 weeks ago
Alternatives and similar repositories for zadu
Users that are interested in zadu are comparing it to the libraries listed below
Sorting:
- Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)☆113Updated 3 weeks ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆47Updated 10 months ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆150Updated 4 years ago
- Contrastive neighbor embeddings☆55Updated 3 weeks ago
- ☆61Updated 8 months ago
- Understanding the theory behind UMAP☆176Updated 2 weeks ago
- Progressive Uniform Manifold Approximation and Projection (EuroVis 2020 short)☆13Updated 2 years ago
- Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep…☆151Updated 4 years ago
- All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout☆85Updated last week
- Hierarchical Uniform Manifold Approximation and Projection☆237Updated 7 months ago
- ☆33Updated 4 months ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- ☆15Updated 2 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆101Updated last week
- A spectral method for assessing and combining multiple data visualizations☆50Updated 2 years ago
- The landscape of biomedical research☆120Updated 3 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆22Updated 11 months ago
- Algorithmically create or extend categorical colour palettes☆225Updated 4 months ago
- Explaining dimensionality results using SHAP values☆55Updated 8 months ago
- code for Gogleva et al manuscript☆46Updated 2 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.☆75Updated last week
- ☆17Updated last year
- Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise☆37Updated 2 years ago
- Quality Metrics for evaluating the inter-cluster reliability of Multidimensional Projections☆27Updated 2 years ago
- Unsupervised visualization of image datasets using contrastive learning☆116Updated 4 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆89Updated 3 months ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- ☆23Updated 3 years ago