Alternatives and similar repositories for notebooks:

Users that are interested in notebooks are comparing it to the libraries listed below

• wassermanlab / TFFM
  TFFM framework
  ☆12Updated 3 years ago
• vals / Reading-PCA
  ☆16Updated 7 years ago
• blekhmanlab / hominid
  Hominid: host-microbiome interaction identification
  ☆16Updated 9 months ago
• olgabot / kvector
  kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths
  ☆10Updated 7 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• PanosFirmpas / bamToBigWig
  Directly create a bigwig file with signal derived from a sorted and indexed bam file.
  ☆11Updated 7 years ago
• xguse / blacktie
  Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline
  ☆26Updated 9 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago
• BenLangmead / seq-frontiers-class
  Code, examples, reading list for JHU Frontiers of Sequencing Data Analysis class
  ☆24Updated 11 years ago
• tengmx / gcapc
  ChIP-seq peak calling with GC effects adjustment
  ☆9Updated 6 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• your-highness / normR
  Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.
  ☆11Updated 3 years ago
• mohimanilab / MetaMiner
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Updated 3 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 4 years ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆30Updated 7 years ago
• arahuja / pytcga
  DEPRECATED: Store and query public TCGA data
  ☆11Updated 8 years ago
• rthurman / hotspot
  Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.
  ☆14Updated 10 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 4 years ago
• Bioconductor / UseBioconductor
  Training material for intermediate R / Bioconductor courses
  ☆17Updated 2 years ago
• eriqande / sisg_mcmc_course
  Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics
  ☆28Updated 3 years ago
• davek44 / utility
  Computational biology utility scripts
  ☆19Updated 9 months ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆20Updated 7 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 7 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated 2 years ago
• sarbal / EGAD
  Gene network analysis
  ☆19Updated 2 years ago
• michaelbarton / bioinformatics-career-survey
  Survey of bioinformatics field
  ☆26Updated 13 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• gawbul / pyEnsemblRest
  A client for the Ensembl REST API written in the Python programming language
  ☆26Updated 3 months ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆17Updated 7 months ago