mitobo-hub / mitoboLinks
MiToBo - A microscope image analysis toolbox
☆13Updated 3 months ago
Alternatives and similar repositories for mitobo
Users that are interested in mitobo are comparing it to the libraries listed below
Sorting:
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆12Updated 3 years ago
- ☆20Updated this week
- ImageJ Macro Scripts showcased during Image Processing and Analysis for Life Scientists MOOC on EdX☆26Updated 5 years ago
- ☆18Updated last month
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- ImgLib2 RealTransform brought to QuPath☆28Updated 3 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 2 months ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Updated last year
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆31Updated this week
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 11 months ago
- SCIFIO ImageIO plugin for ITK☆16Updated 2 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last month
- ImgLib2-based viewer for registered SPIM stacks and more☆41Updated last week
- ImageJ Ops: "Write once, run anywhere" image processing☆92Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆46Updated 11 months ago
- SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so d…☆95Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Updated last year
- ImageJ convenience layer for N5☆19Updated 2 months ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated last year
- Janelia Workstation☆25Updated last month
- GPU-accelerated image processing for everyone☆55Updated last year
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Updated 3 years ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Easily read and write ome-tiff images in python☆28Updated last year
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- OME model (specification, code generator, implementation)☆16Updated last week