mitobo-hub / mitobo
MiToBo - A microscope image analysis toolbox
☆12Updated 2 months ago
Alternatives and similar repositories for mitobo
Users that are interested in mitobo are comparing it to the libraries listed below
Sorting:
- ☆20Updated last month
- A repository for an Eclipse ImageJ1 plugin contributed from the Bio7 project.☆7Updated 3 weeks ago
- ImageJ plugins for blind decomposition of fluorencence microscopy data☆10Updated 10 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- ImgLib2 RealTransform brought to QuPath☆24Updated 2 weeks ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Java library for scientific image computing☆16Updated 4 years ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆12Updated 2 years ago
- Simple Maven project for an ImageJ2 command☆31Updated 3 years ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- ImageJ Macro Scripts showcased during Image Processing and Analysis for Life Scientists MOOC on EdX☆25Updated 5 years ago
- ImageJ convenience layer for N5☆17Updated this week
- Fiji plugins for starting BigDataViewer and exporting data.☆21Updated 7 months ago
- ImgLib2-based viewer for registered SPIM stacks and more☆40Updated 3 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 months ago
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Updated 11 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 7 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 3 months ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- MATLAB integration with ImageJ data structures and runtime.☆14Updated 3 months ago
- Janelia Workstation☆23Updated last month
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- CLIJ is deprecated. Visit CLIJ2☆56Updated 3 years ago
- OME model (specification, code generator, implementation)☆14Updated 2 months ago
- ☆104Updated 3 weeks ago
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated 2 weeks ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Updated 2 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- ☆18Updated last year
- Github Pages☆12Updated last year