Alternatives and similar repositories for braingeneerspy

Users that are interested in braingeneerspy are comparing it to the libraries listed below

• MouseLand / rastermap
  a visualization method for neural data
  ☆240Updated 8 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 3 months ago
• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆112Updated last week
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆228Updated this week
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆73Updated 5 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated 3 weeks ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆106Updated this week
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated this week
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆157Updated 3 weeks ago
• murthylab / GLMHMM
  ☆24Updated 5 years ago
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆27Updated 3 months ago
• AllenInstitute / AllenSDK
  code for reading and processing Allen Institute for Brain Science data
  ☆371Updated last year
• BlueBrain / eFEL
  Electrophys Feature Extraction Library
  ☆75Updated 9 months ago
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆50Updated 4 months ago
• INM-6 / viziphant
  Visualization of electrophysiological data from Elephant
  ☆24Updated last year
• AllenInstitute / biophys_optimize
  Optimization of single-cell biophysically detailed models
  ☆15Updated 5 years ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated 2 months ago
• zashwood / ssm
  Bayesian learning and inference for state space models
  ☆14Updated 3 years ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆61Updated 2 years ago
• lfads / lfads-run-manager
  Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)
  ☆50Updated 4 years ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆71Updated last week
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆38Updated 2 weeks ago
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆23Updated 2 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆101Updated 10 months ago
• suny-downstate-medical-center / netpyne
  A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks…
  ☆164Updated 3 weeks ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆39Updated 2 years ago
• flatironinstitute / kachery-cloud
  ☆23Updated last year
• AllenNeuralDynamics / aind-ephys-pipeline
  AIND pipeline for processing extracellular electrophysiology data
  ☆21Updated 3 weeks ago