Alternatives and similar repositories for PPDOCK

Users that are interested in PPDOCK are comparing it to the libraries listed below

• guyuehuo / opendock
  ☆48Updated 7 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated last month
• ld139 / ApoDock_public
  Code for ApoDock
  ☆20Updated 3 months ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆22Updated 4 months ago
• t03i / FlatProt
  A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.
  ☆15Updated 2 weeks ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last week
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆29Updated last year
• Furman-Lab / PatchMAN
  ☆26Updated this week
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated last month
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated 3 weeks ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆42Updated 2 years ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆19Updated last year
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆27Updated 5 months ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆30Updated last week
• HPCLab-933 / Vina-CUDA
  Vina-CUDA: further accelerating Autodock Vina with in-depth utilization of GPU hardware characteristics
  ☆31Updated 3 weeks ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 4 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆32Updated 7 years ago
• molML / peptidy
  The official codebase of peptidy, a peptide processing tool for machine learning.
  ☆32Updated 2 months ago
• meyresearch / BALM
  Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models
  ☆27Updated 7 months ago
• HITS-MBM / conan
  Analysis of contacts in molecular dynamics trajectories
  ☆43Updated 5 years ago
• NiBoyang / AutoDock-SS
  Use AutoDock for Ligand-based Virtual Screening
  ☆22Updated 10 months ago
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆17Updated last year
• ci-lab-cz / streamd
  Fully automated high-throughput MD pipeline
  ☆61Updated 3 weeks ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆63Updated 3 months ago
• ullahsamee / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆28Updated 7 months ago
• kjwallace / DiffDock_GPU
  Dockerized Version of the DiffDock model from MIT
  ☆13Updated 2 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆63Updated 5 months ago
• BaoJingxiao / DeepBSP
  Deep Binding Structure RMSD Prediction
  ☆22Updated 4 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated 2 months ago