JieDuTQS / PPDOCKLinks
☆21Updated 4 months ago
Alternatives and similar repositories for PPDOCK
Users that are interested in PPDOCK are comparing it to the libraries listed below
Sorting:
- Explicit crosslinks in AlphaFold 3☆22Updated 5 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated last month
- Code for ApoDock☆20Updated 4 months ago
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆17Updated 3 weeks ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 3 months ago
- ☆26Updated 3 weeks ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆19Updated 8 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆36Updated 2 months ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆27Updated 6 months ago
- Modelling protein conformational landscape with Alphafold☆51Updated last month
- ☆15Updated 6 months ago
- ☆15Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆30Updated last year
- Code for deep learning guided design of dynamic proteins☆30Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆19Updated 6 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 6 months ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- ☆49Updated 8 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆70Updated 3 weeks ago
- Vina-CUDA: further accelerating Autodock Vina with in-depth utilization of GPU hardware characteristics☆35Updated 2 months ago
- Deep Binding Structure RMSD Prediction☆22Updated 4 years ago
- A Unified Approach to Protein Engineering☆42Updated last year
- Dockerized Version of the DiffDock model from MIT☆13Updated 2 years ago
- Universal framework for physically based computational protein design☆35Updated 2 years ago
- Machine learning prediction of enzyme optimum pH☆44Updated 4 months ago
- ☆19Updated 9 months ago
- PyDock Tutorial☆33Updated 7 years ago
- The official codebase of peptidy, a peptide processing tool for machine learning.☆33Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year