vargasliqin / GTEx_edQTL
☆9Updated 2 years ago
Alternatives and similar repositories for GTEx_edQTL:
Users that are interested in GTEx_edQTL are comparing it to the libraries listed below
- Quality control steps for GWAS☆19Updated last year
- TWAS-pipeline☆22Updated 3 years ago
- Manhattan++☆28Updated 11 months ago
- SCALLOP-INF analysis☆20Updated 4 months ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Updated 3 years ago
- R package for processing of GWAS output☆13Updated 6 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆33Updated 4 months ago
- ☆21Updated 3 years ago
- A Fine-Mapping pipeline☆19Updated 5 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- Regional association plots☆25Updated 9 months ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Colocalization analysis of genetic association signals☆50Updated 2 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 9 months ago
- Statistical tools for Quantitative Genetic Analyses☆35Updated 3 weeks ago
- ☆19Updated 3 weeks ago
- An R package for creating ggplot2 based miami plots.☆16Updated 10 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆30Updated 5 months ago
- A collection of various utilities for GWAS summary statistics☆26Updated 8 months ago
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Updated 3 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆22Updated 2 months ago
- A powerful TWAS framework leveraging summary-level reference data☆26Updated 2 weeks ago
- Fine-mapping with infinitesimal effects☆14Updated 10 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆28Updated 7 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆20Updated this week