Alternatives and similar repositories for GP2-Beginner-Bioinformatics-for-PD-Genetics:

Users that are interested in GP2-Beginner-Bioinformatics-for-PD-Genetics are comparing it to the libraries listed below

• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• sterding / BRAINcode
  Script and pipeline for BRAINcode project
  ☆17Updated 3 years ago
• jackhump / WGS-QC-Pipeline
  A Snakemake pipeline for Quality Control of Whole Genome Sequencing data
  ☆14Updated 3 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆20Updated last year
• Bio-OS / bio-mate
  ☆10Updated 10 months ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated 4 months ago
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆12Updated 6 years ago
• zhaoshuoxp / lncRNA
  De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk
  ☆10Updated last year
• vargasliqin / GTEx_edQTL
  ☆9Updated 2 years ago
• Nealelab / whole_genome_analysis_pipeline
  ☆18Updated last year
• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 5 years ago
• lulab / shared_scripts
  shared scripts in Lu Lab @ Tsinghua University
  ☆10Updated 6 years ago
• atgu / GWASpy
  GWAS QC, PCA, haplotype phasing, genotype imputation
  ☆18Updated last week
• zhilizheng / qsubshcom
  qsub command for serveral cluster engine
  ☆14Updated 2 months ago
• bhattacharya-a-bt / isotwas
  ☆21Updated 2 months ago
• Xinglab / Myc-regulated_AS_PrCa_paper
  Scripts for plotting figures and running analysis throughout the manuscript
  ☆11Updated 3 years ago
• eacooper400 / GWAS_Pipelines
  Instructions and helpful R code for Running GEMMA and GAPIT
  ☆12Updated 7 years ago
• DelinLi / TWAS
  Example for TWAS
  ☆11Updated 3 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆34Updated 3 months ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• pzweuj / DNApipeline
  通过配置文件实现一条命令完成常见DNA线的生信分析
  ☆8Updated 3 years ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆16Updated last year
• iaaaka / evo-devo
  ☆11Updated 4 years ago
• pandora414 / lncRNA
  lncRNA分析流程
  ☆8Updated 6 years ago
• swvanderlaan / GWASToolKit
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆18Updated 5 months ago
• Shuhua-Group / CPC-graph-based-NGS-pipeline
  A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
  ☆16Updated 6 months ago
• JianYang-Lab / crussmap
  crussmap is a faster tool to convert genome coordinates between difference reference assemblies.
  ☆14Updated last year
• hakyimlab / PredictDBPipeline
  ☆15Updated 4 years ago