udel-biotm-lab / BERT-RELinks
☆9Updated 4 years ago
Alternatives and similar repositories for BERT-RE
Users that are interested in BERT-RE are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- PhenoTagger☆57Updated last year
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆190Updated last year
- ☆22Updated 2 years ago
- A full-text article retrieval pipeline for biomedical literature.☆21Updated 4 months ago
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆29Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆54Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 4 years ago
- AIONER☆56Updated 11 months ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- ☆67Updated 2 years ago
- ☆27Updated 2 years ago
- ☆56Updated 4 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Updated 2 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆194Updated 2 years ago
- Search the biomedical literature for protein interactions and protein associations☆11Updated last year
- ☆24Updated 4 years ago
- A combined deep learning tool for automated recognition of human phenotype ontology☆25Updated 2 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 8 months ago
- Biomedical Entity Linking Benchmark☆13Updated 7 months ago
- Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utilit…☆31Updated 5 years ago
- ☆152Updated last year
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- SciFive: a text-text transformer model for biomedical literature☆96Updated last year
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆63Updated 2 weeks ago
- ☆23Updated 8 months ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆50Updated last week
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆121Updated 3 years ago