Alternatives and similar repositories for stackr

Users that are interested in stackr are comparing it to the libraries listed below

• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆36Updated last year
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated last month
• EricArcher / strataG
  strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
  ☆26Updated 2 weeks ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆151Updated last year
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated last month
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆16Updated 3 years ago
• bodkan / demografr
  Fast and simple simulation-based population genetic inference in R
  ☆27Updated last month
• gbradburd / SpaceMix
  ☆30Updated 2 years ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated 2 weeks ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated last month
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆33Updated 4 years ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆60Updated this week
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆31Updated 5 months ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆33Updated 5 months ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated 8 months ago
• ANGSD / NgsRelate
  ☆43Updated 4 months ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆19Updated 4 years ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 7 years ago
• bbanbury / phrynomics
  A collection of R code for dealing with SNP data and analyses
  ☆24Updated 2 years ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 5 months ago
• gehara / PipeMaster
  An R Package to build and simulate coalescent models
  ☆20Updated last year
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆43Updated 3 months ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆29Updated 4 years ago
• kkeenan02 / diveRsity
  diveRsity: A comprehensive, general purpose population genetics analysis package.
  ☆26Updated 7 years ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆103Updated last year
• uqrmaie1 / admixtools
  ☆83Updated 2 months ago
• marcomilanesi / BITE
  BITE: BioInformatics tools for everyone
  ☆21Updated last year