Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38
☆17May 20, 2024Updated last year
Alternatives and similar repositories for phoenix
Users that are interested in phoenix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow management system written as a pure Python package and command-line utility. It supports complex workflows modeled as directed- …☆17Mar 20, 2026Updated 3 weeks ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 3 years ago
- cyclone☆19Jul 21, 2015Updated 10 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆21Jul 6, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models☆17Nov 20, 2025Updated 4 months ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.☆24Nov 23, 2025Updated 4 months ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 4 months ago
- automatic update Clinvar db for ANNOVAR☆10Apr 6, 2026Updated last week
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 2 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Aug 21, 2025Updated 7 months ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- MicrOSAtellite Instability Classifier☆15Dec 12, 2017Updated 8 years ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Jul 30, 2020Updated 5 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- A collaborative project to build R tools facilitating access to quantitative healthcare and public health data☆26Mar 11, 2014Updated 12 years ago
- ☆11May 12, 2021Updated 4 years ago
- do some exercise☆14Dec 2, 2025Updated 4 months ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 5 months ago
- mRMRe is a package for Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection☆21Sep 3, 2021Updated 4 years ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Apr 15, 2018Updated 8 years ago
- ☆25Dec 17, 2025Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆43Aug 14, 2023Updated 2 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- duty is a command line todo application with desktop notification☆22Oct 15, 2017Updated 8 years ago
- Bioinformatics pipelines for Resolwe☆19Mar 24, 2026Updated 3 weeks ago
- Tests for the equality of coefficients of variation from multiple groups☆13Feb 19, 2023Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆41Jan 6, 2021Updated 5 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 5 years ago
- CureFFI.org☆16Mar 17, 2026Updated 3 weeks ago