Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38
☆17May 20, 2024Updated 2 years ago
Alternatives and similar repositories for phoenix
Users that are interested in phoenix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow management system written as a pure Python package and command-line utility. It supports complex workflows modeled as directed- …☆18Mar 20, 2026Updated 4 months ago
- GLASS consortium☆14May 31, 2022Updated 4 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 3 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- cyclone☆19Jul 21, 2015Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆21Jul 6, 2023Updated 3 years ago
- A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.☆24Nov 23, 2025Updated 8 months ago
- Battenberg R package for subclonal copynumber estimation☆99May 11, 2026Updated 2 months ago
- chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models☆17Nov 20, 2025Updated 8 months ago
- Clonal structure identification through penalizing pairwise differences☆11Updated this week
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Jul 30, 2020Updated 5 years ago
- automatic update Clinvar db for ANNOVAR☆11Updated this week
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 11 months ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated 2 months ago
- TOPMed Freeze 3 variant calling pipeline☆10Dec 5, 2018Updated 7 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Jul 19, 2017Updated 9 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- do some exercise☆15Dec 2, 2025Updated 7 months ago
- ☆11May 12, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- CureFFI.org☆16Updated this week
- Copy number estimation and variant calling for duplicated genes using WGS.☆38Apr 29, 2026Updated 2 months ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 9 months ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Apr 15, 2018Updated 8 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Targeted genotyper for complex polymorphic genes☆43Updated this week
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bioinformatics pipelines for Resolwe☆19Jul 7, 2026Updated 2 weeks ago
- duty is a command line todo application with desktop notification☆22Oct 15, 2017Updated 8 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 5 years ago
- Tests for the equality of coefficients of variation from multiple groups☆14Feb 19, 2023Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago