Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38
☆17May 20, 2024Updated 2 years ago
Alternatives and similar repositories for phoenix
Users that are interested in phoenix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow management system written as a pure Python package and command-line utility. It supports complex workflows modeled as directed- …☆19Mar 20, 2026Updated 7 months ago
- CLI tools for Slurm clusters☆15Aug 11, 2026Updated 2 months ago
- GLASS consortium☆14May 31, 2022Updated 4 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models☆18Nov 20, 2025Updated 11 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Jul 30, 2020Updated 6 years ago
- automatic update Clinvar db for ANNOVAR☆11Updated this week
- ☆10Oct 21, 2019Updated 7 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 3 years ago
- A Python library for manipulation of CIGAR, MSA, and other alignment formats.☆12Apr 14, 2026Updated 6 months ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- Clonal structure identification through penalizing pairwise differences☆11Sep 29, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Jul 19, 2017Updated 9 years ago
- Copy number estimation and variant calling for duplicated genes using WGS.☆41Apr 29, 2026Updated 6 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆45Aug 21, 2025Updated last year
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated 6 months ago
- CureFFI.org☆16Oct 22, 2026Updated last week
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated last year
- TOPMed Freeze 3 variant calling pipeline☆10Dec 5, 2018Updated 7 years ago
- Examples on how to use the karyoploteR R/Bioconductor package☆12Feb 3, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- do some exercise☆15Dec 2, 2025Updated 10 months ago
- Get gene sets for gene enrichment analysis (GEA)☆12Oct 19, 2026Updated last week
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- duty is a command line todo application with desktop notification☆22Oct 15, 2017Updated 9 years ago
- ☆12Jun 26, 2026Updated 4 months ago
- Bioinformatics pipelines for Resolwe☆19Sep 25, 2026Updated last month
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Apr 15, 2018Updated 8 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated 2 years ago
- Software for processing molecular barcoding (UMI)-based NGS data☆10May 22, 2020Updated 6 years ago
- Tests for the equality of coefficients of variation from multiple groups☆14Feb 19, 2023Updated 3 years ago
- Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks☆12Jun 16, 2020Updated 6 years ago
- Targeted genotyper for complex polymorphic genes☆50Updated this week
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 4 years ago