Alternatives and similar repositories for rosetta

Users that are interested in rosetta are comparing it to the libraries listed below

• nrbennet / dl_binder_design
  ☆342Updated last year
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆315Updated 2 weeks ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆426Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆317Updated 9 months ago
• RosettaCommons / RFantibody
  ☆263Updated 4 months ago
• dauparas / LigandMPNN
  ☆426Updated 6 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆371Updated last year
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆344Updated 2 weeks ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆306Updated last year
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆280Updated 2 months ago
• PDB-REDO / dssp
  Application to assign secondary structure to proteins
  ☆206Updated last week
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆230Updated last month
• Discngine / fpocket
  fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scien…
  ☆377Updated 11 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆640Updated 2 weeks ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆265Updated 2 years ago
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆181Updated this week
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆160Updated last year
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆365Updated last year
• ChatMol / ChatMol
  ChatMol
  ☆234Updated 5 months ago
• forlilab / Meeko
  Interface for AutoDock, molecule parameterization
  ☆269Updated last week
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆199Updated 3 months ago
• uw-ipd / RoseTTAFold2
  ☆198Updated 4 months ago
• Valdes-Tresanco-MS / gmx_MMPBSA
  gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
  ☆271Updated last month
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆190Updated 6 months ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆600Updated last year
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆232Updated last year
• KosinskiLab / AlphaPulldown
  ☆289Updated this week
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆212Updated 2 years ago
• ChatMol / gromacs_copilot
  Let LLM run your MDs.
  ☆224Updated 4 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆297Updated 2 weeks ago