The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites
☆75Apr 30, 2026Updated this week
Alternatives and similar repositories for sgn
Users that are interested in sgn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resourc…☆19Updated this week
- The Dockerfiles for breeDBase☆12Apr 27, 2026Updated last week
- Web application for field trial analysis.☆40Sep 29, 2025Updated 7 months ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 11 years ago
- An R package to use the Breeding API (BrAPI) for accessing plant breeding data.☆12Dec 18, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆59Apr 5, 2026Updated last month
- Repository for version control of the BrAPI specifications☆71Updated this week
- RelocaTE2☆18Oct 6, 2023Updated 2 years ago
- A deeplearning driving bioinformatic toolkit.☆25Jul 14, 2025Updated 9 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 6 months ago
- Minimum Information About a Plant Phenotyping Experiment☆39Jan 7, 2026Updated 3 months ago
- In-Field Phenotyping Based on Crop Leaf and Plant Instance Segmentation☆21Jul 14, 2023Updated 2 years ago
- Genetic maps in autopolyploids☆32Jan 12, 2026Updated 3 months ago
- Data and scripts used in the oneKP capstone analyses☆13Apr 5, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Jun 30, 2022Updated 3 years ago
- Workshop bringing together individuals interested in developing curriculum, workflows, and tools to strengthen reproducibility in researc…☆33Jul 12, 2015Updated 10 years ago
- FAST: Fast Analysis of Sequences Toolbox☆32Oct 18, 2019Updated 6 years ago
- Practical Haplotype Graph (PHG) version 2☆31Apr 29, 2026Updated last week
- R package for fitting high-dimensional multivariate linear mixed effect models☆38Oct 20, 2025Updated 6 months ago
- Pipeline to Extract Plant Phenotypes from Reference Data☆25Feb 24, 2025Updated last year
- ☆14Feb 16, 2026Updated 2 months ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 6 years ago
- expVIP. EXPression and VIsualisation Platform☆17Mar 8, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Impute DNA methylation from WGBS data.☆11Apr 23, 2019Updated 7 years ago
- Application to extract features from plant root images☆28Oct 21, 2025Updated 6 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Mar 24, 2025Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆47Jun 7, 2023Updated 2 years ago
- ☆35Dec 24, 2020Updated 5 years ago
- Analysis tools for SLEAP-based plant root phenotyping.☆13Apr 24, 2026Updated last week
- Corn Point Cloud Deformation Tool☆15Dec 18, 2025Updated 4 months ago
- Simple web-based calculator for the game Foundry.☆10Jun 10, 2024Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- 3D GWAS across multiple phenotypes☆13Oct 11, 2022Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Mar 5, 2018Updated 8 years ago
- Implementation of the 3D reconstruction pipeline optimized for plant branching structures.☆18Feb 24, 2025Updated last year
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆51May 26, 2025Updated 11 months ago
- I want to serve my friends lettuce that I grew myself, fertilized by fish-poop generated nitrates from a Recirculating Aquaculture System…☆17Jan 18, 2021Updated 5 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- 🕶️ A list of third party FarmBot software projects.☆20Oct 29, 2021Updated 4 years ago