solgenomics / sgnLinks
The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites
☆67Updated this week
Alternatives and similar repositories for sgn
Users that are interested in sgn are comparing it to the libraries listed below
Sorting:
- Practical Haplotype Graph (PHG) version 2☆27Updated 2 weeks ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- A web application for interactive visualization and exploratory data analysis of variant call matrices☆20Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- software for UCE (and general) phylogenomics☆82Updated 3 months ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- GWAS software that can handle autopolyploids☆28Updated 8 months ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆50Updated last year
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆75Updated 4 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 7 years ago
- Methods for examining PCA locally along the genome.☆81Updated 10 months ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Hitting associations with k-mers☆45Updated 3 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆37Updated last year
- Implementation of the multiple sequential markovian coalescent☆88Updated last year
- Workshop on Genomics - Genomics Adventure☆42Updated 2 weeks ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 2 months ago
- ☆43Updated 3 months ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆43Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆45Updated 4 years ago
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Updated last week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated 3 weeks ago
- Bio::Phylo - Phyloinformatic analysis using Perl☆16Updated 6 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆47Updated 2 years ago