sbg / okAPI
Recipes and Tutorials for Automation & Extension on the CGC and SBPLAT platforms
☆3Updated 3 years ago
Alternatives and similar repositories for okAPI
Users that are interested in okAPI are comparing it to the libraries listed below
Sorting:
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- ☆68Updated 2 years ago
- CWL tools and workflows for GGR☆21Updated 3 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Updated last year
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated last month
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Updated 2 years ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- An awk-like VCF parser☆56Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆56Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- ☆82Updated 3 years ago
- Example project for integrating igv.js and flask☆26Updated 7 months ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago