EvanKomp / aide_predictLinks
A toolset and pipeline for running zero shot and supervised protein fitness prediction, drop in compatible with scikitlearn
☆11Updated last month
Alternatives and similar repositories for aide_predict
Users that are interested in aide_predict are comparing it to the libraries listed below
Sorting:
- Slides + Iframe = sliFrame☆55Updated 5 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆84Updated 3 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆98Updated 5 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆118Updated 3 months ago
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆38Updated last week
- Quick mapping of Uniprot sequences to PDB structures☆33Updated 5 months ago
- ☆205Updated last month
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆146Updated 2 weeks ago
- Structure prediction of alternative protein conformations☆78Updated 7 months ago
- ☆35Updated 5 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆77Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Protein Structure Analysis☆55Updated 3 months ago
- Extension of ThermoMPNN for double mutant predictions☆43Updated last month
- 📽️ Game-changing scripts for molecular visualization — produce Hollywood-quality visuals with scientific accuracy and cinematic impact☆66Updated last month
- Plugin for folding sequences directly in PyMOL☆103Updated last month
- Official repository of GENzyme☆53Updated 9 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆81Updated last year
- PandaDock: A Physics-Based Molecular Docking using Python☆76Updated last month
- ☆49Updated 2 months ago
- ☆55Updated 2 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆92Updated 3 months ago
- A benchmark for 3D biomolecular structure prediction models☆66Updated 4 months ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆50Updated 3 months ago
- Efficient implementatin of ESM family.☆74Updated 2 weeks ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆71Updated last month
- A Unified Approach to Protein Engineering☆42Updated last year
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆155Updated last week