rvalieris / LCSLinks
☆9Updated 2 years ago
Alternatives and similar repositories for LCS
Users that are interested in LCS are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- Remove host contaminants from sequencing files☆9Updated 5 years ago
- Haplotype-aware assembly of complex regions and small genomes☆12Updated this week
- convert a blast output to a bed file☆12Updated 10 years ago
- Hierarchical clustering of cgMLST☆11Updated last year
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 6 months ago
- Metagenomics microbial abundance quantification☆28Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆23Updated last week
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆21Updated last year
- Influenza genome analysis Nextflow workflow☆28Updated last week
- viralComplete: BLAST-based viral completeness verification☆25Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Updated 2 years ago
- ☆12Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆15Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 6 months ago
- An RNA virus strain-level identification tool for short reads.☆21Updated last year
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- transposable element typing pipeline☆18Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 3 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 3 weeks ago
- Find Unique genomic Regions☆30Updated 2 weeks ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year