rvalieris / LCSLinks
☆9Updated 2 years ago
Alternatives and similar repositories for LCS
Users that are interested in LCS are comparing it to the libraries listed below
Sorting:
- Remove host contaminants from sequencing files☆9Updated 5 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- Population analysis PIPEline 🛠🧬☆20Updated 2 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆37Updated 3 weeks ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆28Updated 4 months ago
- ☆26Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- ☆28Updated 3 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- ☆22Updated 5 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆32Updated 10 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- Influenza genome analysis Nextflow workflow☆26Updated 2 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Gene-flank analysis tool☆27Updated 6 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Updated 3 years ago
- A script for comparing old vs new versions of genome annotations☆21Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆14Updated 3 years ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated last month
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆16Updated this week