iomega / spec2vecLinks
Word2Vec based similarity measure of mass spectrometry data.
☆78Updated 2 months ago
Alternatives and similar repositories for spec2vec
Users that are interested in spec2vec are comparing it to the libraries listed below
Sorting:
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆71Updated this week
- TidyMS: Tools for working with MS data in untargeted metabolomics☆60Updated last year
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆246Updated last week
- The similarity score for spectral comparison☆84Updated 11 months ago
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Updated 4 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆32Updated last week
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆72Updated last year
- ☆27Updated 3 weeks ago
- A known-to-unknown metabolite identification workflow☆21Updated 5 years ago
- ☆33Updated last year
- ☆29Updated last year
- ☆23Updated 10 months ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Updated 2 years ago
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Updated last month
- MS2Query - machine learning assisted library querying of MS/MS spectra☆54Updated 3 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆19Updated last year
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆30Updated last year
- ☆16Updated 2 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Updated 3 weeks ago
- ☆22Updated 4 months ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Updated last year
- ☆37Updated last month
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23Updated 8 months ago
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆59Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- ☆72Updated last year
- Spectral entropy for mass spectrometry data.☆34Updated last month
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆34Updated 4 years ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆56Updated last month
- A small library to provide peak picking for software processing mass spectrometry data☆23Updated last year