iomega / spec2vec
Word2Vec based similarity measure of mass spectrometry data.
☆65Updated 6 months ago
Alternatives and similar repositories for spec2vec:
Users that are interested in spec2vec are comparing it to the libraries listed below
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆60Updated last week
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Updated 3 years ago
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆203Updated this week
- TidyMS: Tools for working with MS data in untargeted metabolomics☆55Updated 8 months ago
- A known-to-unknown metabolite identification workflow☆20Updated 4 years ago
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆28Updated 2 months ago
- ☆32Updated last week
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆32Updated 3 years ago
- The similarity score for spectral comparison☆75Updated last week
- ☆22Updated last year
- ☆17Updated 10 months ago
- A small library to provide peak picking for software processing mass spectrometry data☆21Updated 3 months ago
- ☆32Updated 3 months ago
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆52Updated 9 months ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆44Updated 5 months ago
- ☆11Updated last week
- ☆24Updated last year
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆19Updated last month
- ☆16Updated 2 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆25Updated 3 weeks ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆27Updated this week
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆98Updated last month
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆124Updated last month
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Updated 8 months ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆29Updated last year
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆15Updated 4 months ago
- DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)☆27Updated this week
- A Python wrapper for the Chemistry Development Kit (CDK)☆31Updated 5 years ago
- Community-curated tutorials and datasets for ML in proteomics☆49Updated 3 months ago
- ☆21Updated 5 months ago