iomega / spec2vecLinks
Word2Vec based similarity measure of mass spectrometry data.
☆72Updated last year
Alternatives and similar repositories for spec2vec
Users that are interested in spec2vec are comparing it to the libraries listed below
Sorting:
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆68Updated this week
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆225Updated this week
- TidyMS: Tools for working with MS data in untargeted metabolomics☆56Updated last year
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆64Updated last year
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆31Updated 2 years ago
- ☆23Updated 5 months ago
- ☆25Updated last month
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆29Updated 8 months ago
- A known-to-unknown metabolite identification workflow☆20Updated 4 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆30Updated last month
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆21Updated 3 months ago
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Updated 2 weeks ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆46Updated 3 months ago
- ☆14Updated last month
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Updated 4 years ago
- ☆118Updated 2 years ago
- ☆36Updated 2 months ago
- The similarity score for spectral comparison☆81Updated 5 months ago
- ☆32Updated 8 months ago
- ☆27Updated last year
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆33Updated 4 years ago
- A small library to provide peak picking for software processing mass spectrometry data☆23Updated 8 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆18Updated 10 months ago
- ☆15Updated 3 years ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Updated 2 years ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆22Updated 9 months ago
- ☆68Updated last year
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆114Updated last week
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆52Updated last month
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated 3 weeks ago