Phase 2 repo for the Inserm Workshop on Machine Learning in Biology
☆19Dec 17, 2025Updated 10 months ago
Alternatives and similar repositories for Deep-Learning-for-Genomics-Training
Users that are interested in Deep-Learning-for-Genomics-Training are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training on CNN and basic ML for genomics☆31Sep 22, 2025Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Tutorial on large language models for genomics☆291Jun 5, 2025Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆43Oct 27, 2026Updated last week
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Base package for GenericKnimeNodes☆15Jan 27, 2025Updated last year
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 10 months ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- ☆13Jul 16, 2026Updated 3 months ago
- Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.☆21Apr 5, 2017Updated 9 years ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆20Nov 15, 2018Updated 7 years ago
- Metagenome read simulation of multiple synthetic communities☆10Jan 6, 2024Updated 2 years ago
- Biomark Fluidigm qPCR data set: processing and analysis☆10Apr 8, 2024Updated 2 years ago
- Putative G Quadruplex prediction from Fasta file☆10May 15, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- SuperCell for Cytometry data☆13Oct 14, 2025Updated last year
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 4 years ago
- ☆24Apr 17, 2025Updated last year
- ☆11Aug 8, 2025Updated last year
- miRTrace☆13Jun 14, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆21Sep 18, 2019Updated 7 years ago
- R scripts for datamining. Goal is to create R scripts that combine good datamining methods and knitr to generate datamining result report…☆18Jun 15, 2016Updated 10 years ago
- Statistical Distributions from R☆12Apr 24, 2014Updated 12 years ago
- Speed reading engine in Javascript☆17Jan 2, 2014Updated 12 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated last year
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆44Feb 3, 2023Updated 3 years ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated last year
- ☆11Jan 29, 2020Updated 6 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆25Dec 1, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Sep 30, 2023Updated 3 years ago
- A novel method for single-cell diagonal integration: scConfluence☆30Nov 3, 2025Updated last year
- Network-based prediction of protein interactions☆11Nov 26, 2020Updated 5 years ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- R package for proximity-based methods of link prediction.☆12Aug 11, 2025Updated last year
- Evaluating batch correction methods for image-based cell profiling☆17Aug 11, 2025Updated last year
- Pipeline for the analysis of PE ChIP-seq data☆15Jul 20, 2020Updated 6 years ago