pha4ge / hAMRonization_workflowLinks
Harmonization of AMR predictor tool outputs
☆26Updated 6 months ago
Alternatives and similar repositories for hAMRonization_workflow
Users that are interested in hAMRonization_workflow are comparing it to the libraries listed below
Sorting:
- Split Kmer Analysis☆65Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Recombination-free trees☆58Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 5 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- ☆36Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 2 months ago
- Gene-flank analysis tool☆28Updated 6 months ago
- SeqSero2☆37Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Order and orientation of complete bacterial genomes☆28Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last month
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 3 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated last month
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 2 weeks ago
- Estimate metagenomic coverage and sequence diversity☆54Updated 11 months ago
- Calculate confidence scores from Kraken2 output☆22Updated last year
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago