pha4ge / hAMRonization_workflow
Harmonization of AMR predictor tool outputs
☆23Updated last month
Alternatives and similar repositories for hAMRonization_workflow:
Users that are interested in hAMRonization_workflow are comparing it to the libraries listed below
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Gene-flank analysis tool☆27Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆26Updated 2 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- ☆36Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 2 months ago
- Predict MLST directly from uncorrected long reads☆26Updated 2 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- whole genome MLST analysis☆40Updated 9 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated 3 weeks ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated last year
- ☆52Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 10 months ago
- Recombination-free trees☆57Updated last year
- Code Safety Inspection Service☆20Updated 2 years ago
- SC2 variant detection and composition pipeline☆16Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- rapidly rid reads of horrid humans☆15Updated 3 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 7 months ago
- IslandPath standalone software☆31Updated last year
- Order and orientation of complete bacterial genomes☆27Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 7 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago