petermchale / tumorLinks
A spatial Markov model of agents making decisions based upon their surroundings. Stochastic optimization via Markov Chain Monte Carlo (Metropolis-Hastings algorithm). Interactive visualization of data using the JavaScript library D3.
☆8Updated last year
Alternatives and similar repositories for tumor
Users that are interested in tumor are comparing it to the libraries listed below
Sorting:
- A data analysis package for high-dimensional, multi-block data.☆12Updated 3 years ago
- Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology☆32Updated 4 months ago
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆48Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Python implementation of Bayesian hierarchical clustering and Bayesian rose trees algorithms.☆17Updated 4 years ago
- ☆21Updated 8 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated last year
- ☆10Updated 3 years ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- Use LSTM neural network for 1D distributional data prediction☆22Updated 2 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- Network inference by fusing data from diverse distributions☆14Updated 8 years ago
- ☆13Updated 10 months ago
- Functional matrix factorization via Bayesian tensor filtering☆13Updated 2 years ago
- DEPRECATED: Store and query public TCGA data☆11Updated 8 years ago
- stand alone Neural Additive Models, forked from google-reasearch for easy import to colab☆28Updated 4 years ago
- An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.☆37Updated last year
- Here we address the global structure preservation by tSNE and UMAP☆48Updated 5 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆20Updated 2 years ago
- a super basic tutorial on how to create a pytorch models for raw DNA sequences☆23Updated 2 years ago
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 4 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆18Updated 3 weeks ago
- Online Principal Component Analysis☆23Updated last month
- Implementation of LSTM for detecting regions of Neanderthal introgression in modern human genomes☆9Updated 5 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- The Union of Intersections Framework in Python☆14Updated last week
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago