Highly accurate prediction of single-cell spatial transcriptomics from histology images
☆37Oct 18, 2026Updated last week
Alternatives and similar repositories for phoenix
Users that are interested in phoenix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Mar 4, 2026Updated 7 months ago
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆104Updated this week
- ☆40Jun 11, 2026Updated 4 months ago
- Gamified image segmentation quality estimation☆20May 1, 2025Updated last year
- Haiku: Linking Spatial Biology and Clinical Histology via Tri-Modal Contrastive Learning☆25Oct 8, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆11Jul 15, 2024Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆19Sep 21, 2026Updated last month
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆84Updated this week
- ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data☆17Aug 4, 2026Updated 2 months ago
- Public landing page and releases for CellTune.☆12Jul 13, 2026Updated 3 months ago
- ☆18Apr 9, 2026Updated 6 months ago
- Profile purification of single-cell spatial transcriptomics data☆67Jun 29, 2026Updated 4 months ago
- ☆22Oct 28, 2025Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆153Jun 3, 2025Updated last year
- Terminal + web UI for browsing Nextflow tasks, logs, and output files☆12Sep 13, 2026Updated last month
- ☆17Sep 29, 2023Updated 3 years ago
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆19Jun 23, 2025Updated last year
- A spatial proteomics foundation model for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling…☆162Updated this week
- ☆22Aug 9, 2026Updated 2 months ago
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆26Jan 20, 2026Updated 9 months ago
- ☆10Mar 10, 2026Updated 7 months ago
- Single-cell spatial omics analysis that makes you happy!☆79Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A toolkit to test, validate, and improve agentic skills.☆18Updated this week
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆54Jul 27, 2025Updated last year
- Visualize 3D ST data in Jupyter☆27Aug 21, 2026Updated 2 months ago
- ☆37Oct 12, 2026Updated 2 weeks ago
- A multi-tissue dataset linking spatial transcriptomics and histology for cell type annotation☆17Apr 2, 2026Updated 6 months ago
- Spatial Expression-Aligned Learning to improve pathology foundation models☆50Feb 17, 2026Updated 8 months ago
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆65Oct 16, 2026Updated last week
- ☆102Jul 7, 2026Updated 3 months ago