R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series
☆15Jan 1, 2026Updated 10 months ago
Alternatives and similar repositories for cfr
Users that are interested in cfr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility☆15Mar 26, 2026Updated 7 months ago
- Tools for interactive visualisation of epidemiological data☆14Sep 12, 2026Updated last month
- R package for easier interactions with the Go.Data API☆13May 15, 2023Updated 3 years ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆39Sep 28, 2026Updated last month
- ☆17Mar 30, 2026Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Shiny app to display and explore #TidyTuesday plots.☆22Aug 27, 2025Updated last year
- ☆14Oct 20, 2023Updated 3 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Oct 10, 2026Updated 3 weeks ago
- The repository of the Epidemiologist Julia Handbook☆10Mar 4, 2025Updated last year
- Compute and visualise incidence (reworking of the original incidence package)☆17Mar 25, 2026Updated 7 months ago
- Estimate epidemiological delay distributions with brms☆17Oct 26, 2026Updated last week
- ☆10May 20, 2024Updated 2 years ago
- Simulate infectious disease transmission with contact tracing☆18Oct 5, 2026Updated 3 weeks ago
- Data and scripts for epidemiological analysis of the 2026 Bundibugyo Ebola outbreak☆70Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Epidemiology modelling framework for the Thanzi la Onse project☆35Updated this week
- [On-CRAN] Systematically deploy files across multiple GitHub repositories☆18Aug 22, 2025Updated last year
- An R package with some convenience functions for graphing and data cleaning☆12Oct 7, 2025Updated last year
- Repository to the R package nowcaster, nowcasting with INLA☆25Sep 18, 2026Updated last month
- Report templates and helper functions for applied epidemiology☆46Feb 25, 2026Updated 8 months ago
- Materials from NICAR session "Customizing ggplot for yourself or your organization"☆16Feb 2, 2026Updated 9 months ago
- Steve's {ggplot2} themes and related theme elements☆12Apr 27, 2023Updated 3 years ago
- SEIR+ model☆21Jul 25, 2025Updated last year
- An R package for analyzing censored and under-reported surveillance data.☆10Apr 11, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Source code for the EpiEstim app.☆35Aug 7, 2025Updated last year
- Support for the DIDE cluster☆10Nov 22, 2024Updated last year
- Utility provides a more meaningful measure of forecast skill than goodness-of-fit☆18Apr 26, 2022Updated 4 years ago
- ICI3D R tutorials☆17Updated this week
- A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, a…☆19Sep 1, 2026Updated 2 months ago
- ☆44Apr 13, 2026Updated 6 months ago
- ☆12Oct 2, 2026Updated last month
- Data Cleaning workshop for the 2023 R/Medicine Conference☆17Jan 2, 2024Updated 2 years ago
- An R package of assertive functions to check the properties of common R objects.☆13Oct 13, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TEMPLATE for R Markdown lessons☆12Oct 27, 2026Updated last week
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated last year
- An R package to import, clean, and store case data☆24Dec 9, 2022Updated 3 years ago
- Code and Slides for "Whose Scat Is That? An 'Easily Digestible' Introduction to Predictive Modeling in R and the caret Package"☆17Oct 4, 2016Updated 10 years ago
- Valentin Lucet // Msc Thesis // 2018-2020☆10Oct 25, 2026Updated last week
- Survival modelling via ODEs☆12Aug 4, 2026Updated 2 months ago
- Draw different R data structures on graphs☆17Oct 26, 2026Updated last week