neuroinformatics-unit / datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
☆24Updated 2 weeks ago
Alternatives and similar repositories for datashuttle:
Users that are interested in datashuttle are comparing it to the libraries listed below
- A package to manage electrophysiology analysis.☆22Updated this week
- Build unbiased anatomical templates from individual images☆11Updated 2 weeks ago
- Data processing tools for animal behavioural analysis☆17Updated this week
- NIU website on common software problems and their troubleshooting☆10Updated last month
- A repository for our participation in Google Summer of Code☆11Updated last week
- Re-usable GitHub Action scripts☆10Updated 2 weeks ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- Utility to create a basic Python project structure with tests, CI etc.☆28Updated 2 weeks ago
- ☆10Updated 2 years ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆18Updated 4 months ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 2 weeks ago
- ☆10Updated last year
- Loading and saving of image data.☆10Updated last year
- Fancier logging with python.☆12Updated 2 weeks ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆21Updated 2 weeks ago
- Fast, volumetric cell detection. In development.☆16Updated this week
- Visualise brainreg registration output☆10Updated 3 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Updated 2 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated 2 weeks ago
- Brainways☆16Updated this week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Visualisation and exploration of brain atlases☆9Updated 4 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated 2 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆31Updated 2 weeks ago
- LISBET Is a Social BEhavior Transformer (LISBET)☆11Updated 2 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 4 years ago
- A flexible pipeline for analyzing zebrafish locomotion☆10Updated 2 weeks ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year