neuroinformatics-unit / datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
☆15Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for datashuttle
- ☆10Updated last year
- Re-usable GitHub Action scripts☆10Updated 2 weeks ago
- A tool to streamline extracellular electrophysiology analysis using SpikeInterface☆13Updated this week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆17Updated last month
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated 11 months ago
- Fancier logging with python.☆12Updated 2 weeks ago
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆13Updated last week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆20Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated last week
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated 10 months ago
- Loading and saving of image data.☆10Updated 9 months ago
- Visualise brainreg registration output☆10Updated 3 years ago
- General information, resources and dicussions for the BrainGlobe project.☆10Updated 11 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 3 years ago
- Visualisation and exploration of brain atlases☆9Updated 4 years ago
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 3 years ago
- Utility to create a basic Python project structure with tests, CI etc.☆24Updated 2 weeks ago
- Tools for machine learning of animal behavior☆13Updated 8 months ago
- Segmentation of anatomical structures in a common coordinate space☆28Updated last week
- Brainways☆14Updated last week
- A lightweight python package to download neuronal morphologies☆17Updated last week
- Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …☆21Updated last year
- Analyze neuroscience data in the cloud☆19Updated 2 months ago
- ☆19Updated 9 months ago
- Napari plugin for working with video files.☆13Updated last month
- Repository for BehaviorDEPOT pipeline app files and source code☆35Updated last month
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆13Updated last week
- ☆18Updated 2 years ago
- ☆14Updated 2 years ago