Alternatives and similar repositories for Compact-Biomedical-Transformers

Users that are interested in Compact-Biomedical-Transformers are comparing it to the libraries listed below

• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆154Updated 2 years ago
• facebookresearch / bio-lm
  We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
  ☆162Updated 4 years ago
• justinphan3110 / SciFive
  SciFive: a text-text transformer model for biomedical literature
  ☆98Updated last year
• uf-hobi-informatics-lab / ClinicalTransformerRelationExtraction
  A project for developing transformer-based models for clinical relation extraction
  ☆130Updated 2 years ago
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆84Updated 5 months ago
• whaleloops / KEPT
  auto icd coding with prompt
  ☆50Updated last year
• cambridgeltl / cometa
  Corpus of Online Medical EnTities: the cometA corpus
  ☆50Updated 8 months ago
• luoyuanlab / Clinical-Longformer
  ☆63Updated 2 years ago
• kamalkraj / BioELECTRA
  BioELECTRA
  ☆50Updated 4 years ago
• gmichalo / UmlsBERT
  ☆100Updated 3 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆79Updated 3 years ago
• allenai / BEEP
  Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system
  ☆26Updated 2 years ago
• acadTags / Explainable-Automated-Medical-Coding
  Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)
  ☆62Updated 3 years ago
• cambridgeltl / sapbert
  [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
  ☆209Updated 2 years ago
• qingyu-qc / gpt_bionlp_benchmark
  ☆25Updated last year
• allenai / ms2
  ☆67Updated 3 years ago
• dmis-lab / bioasq-biobert
  Pre-trained Language Model for Biomedical Question Answering
  ☆125Updated 2 years ago
• dmis-lab / BioLAMA
  EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?
  ☆57Updated 2 years ago
• dmis-lab / BioSyn
  ACL'2020: Biomedical Entity Representations with Synonym Marginalization
  ☆175Updated 2 years ago
• salrowili / BioM-Transformers
  BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA
  ☆37Updated last year
• dreji18 / Bio-Epidemiology-NER
  Recognize bio-medical entities from a text corpus
  ☆128Updated 2 years ago
• bvanaken / clinical-outcome-prediction
  Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration
  ☆96Updated last year
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 4 years ago
• GanjinZero / ICD-MSMN
  Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]
  ☆53Updated 3 years ago
• simonlevine / clinical-longformer
  ☆38Updated 3 years ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• lindvalllab / clinicalXLNet
  Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation
  ☆50Updated 4 years ago
• Machine-Learning-for-Medical-Language / cnlp_transformers
  Transformers for Clinical NLP
  ☆25Updated 3 months ago
• dmis-lab / BERN2
  BERN2: an advanced neural biomedical namedentity recognition and normalization tool
  ☆200Updated last year
• MiuLab / PLM-ICD
  PLM-ICD: Automatic ICD Coding with Pretrained Language Models
  ☆73Updated 2 years ago