gkotsis / negation-detection
Negation detection NLP tool. If you use the code, please cite George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean, Maria Liakata and Rina Dutta. Don't Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records, Computational Linguistics and Clinical Psychology 2016
☆55Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for negation-detection
- Miscellaneous tools for clinical ML☆29Updated 7 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆124Updated last year
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 5 years ago
- ☆98Updated last year
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆22Updated 4 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 5 years ago
- ☆95Updated 2 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- Classes for ClinicalTrials.gov related projects☆48Updated 5 years ago
- This repository contains machine learning related work for the corpus to graph project, including Jupyter research notebooks and a Flask …☆46Updated 8 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆44Updated 4 years ago
- ☆90Updated 5 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- Inter-annotator agreement for Doccano☆27Updated 4 years ago
- This is an implementation of Hearst patterns, for finding hyponyms, written in Python.☆89Updated 2 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 8 years ago
- Clinical spelling correction with word and character n-gram embeddings.☆74Updated 2 years ago
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago
- Template for AC297r projects☆33Updated 4 years ago
- A simple baseline for the MedNLI dataset☆21Updated 5 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated last year
- Python code for reading Brat Repositories. Supports saving and reading from XML files for easy acces to annotations.☆41Updated 5 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 5 years ago
- BioBert Pytorch☆116Updated last year
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆19Updated 4 years ago
- Machine reading comprehension on clinical case reports☆149Updated 4 years ago