multicom-toolbox / CONFOLDLinks
Contact-based protein structure prediction
☆10Updated 6 years ago
Alternatives and similar repositories for CONFOLD
Users that are interested in CONFOLD are comparing it to the libraries listed below
Sorting:
- Improved ab initio protein structure reconstruction☆15Updated 7 years ago
- Protein structure descriptors and alignment based on 3D Zernike moments.☆39Updated 3 weeks ago
- Contact map alignment☆42Updated 4 years ago
- Physical energy function for protein sequence design☆35Updated 2 years ago
- Real-time structure motif searching in protein 3D structures using an inverted index strategy☆14Updated 5 months ago
- DLPacker☆32Updated last year
- Fast, accurate, and deterministic protein side-chain packing☆36Updated 10 months ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆89Updated 4 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 3 years ago
- The DSSP building software☆48Updated 2 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆50Updated last year
- ☆35Updated 4 years ago
- ☆51Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Updated last year
- ☆29Updated 5 years ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Updated 7 months ago
- PyDock Tutorial☆35Updated 7 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Updated 2 years ago
- Calculation of interatomic interactions in molecular structures☆83Updated 4 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆56Updated 6 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆40Updated 7 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Updated 3 years ago
- Create DSSP and HSSP files☆94Updated last year
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- Conversion of PDBx/mmCIF files to best effort/minimal PDB files☆23Updated last year
- ☆21Updated 2 years ago