[G]enomic [P]ositioning with [Py]thon
☆15Jun 19, 2026Updated last month
Alternatives and similar repositories for gppy
Users that are interested in gppy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- official repository for the UEA sRNA Workbench☆10May 31, 2023Updated 3 years ago
- ☆14Oct 5, 2023Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 4 years ago
- ☆20Mar 31, 2025Updated last year
- bioinfo workflow based on snakemake☆15Feb 22, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 3 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 9 years ago
- Dual-extraction method for phenotypic prediction and functional gene mining of complex traits☆14Oct 30, 2024Updated last year
- The tRNA adaptation index☆21Apr 25, 2025Updated last year
- ☆12Dec 14, 2021Updated 4 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Nov 11, 2022Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆38Nov 8, 2023Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 10 months ago
- rnalib: a python-based transcriptomics library☆13Jan 23, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for CRAG☆12Feb 17, 2025Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆45Jun 7, 2026Updated last month
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆16Jun 26, 2026Updated 3 weeks ago
- release version☆61Jul 29, 2022Updated 3 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆19Jul 19, 2025Updated last year
- ☆14Jul 13, 2020Updated 6 years ago
- ☆10Sep 14, 2023Updated 2 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Codon optimizer for tissue-specific expression☆16Sep 26, 2024Updated last year
- ☆21Sep 1, 2024Updated last year
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- Bioinformatics projects and code shared by Zhi John Lu☆10Jun 3, 2021Updated 5 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Feb 14, 2026Updated 5 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆275Jul 6, 2026Updated 2 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Jan 26, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Apr 28, 2026Updated 2 months ago
- A set of scripts and functions for analyzing MeDIP-seq datasets☆16Feb 3, 2026Updated 5 months ago
- mesa package for Methylation Enrichment Sequencing Analysis☆16Jun 26, 2026Updated 3 weeks ago
- This repository contains projects of Escort and Estag☆26Mar 27, 2025Updated last year
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- Random Mad Libs generator, using Python, NLTK, and Markov chains to replace words with weirder ones.☆15Feb 16, 2014Updated 12 years ago
- Fork of https://code.google.com/p/ngs-analysis☆17Sep 14, 2013Updated 12 years ago