Alternatives and similar repositories for CLO

Users that are interested in CLO are comparing it to the libraries listed below

• PROconsortium / PRoteinOntology

  View on GitHub
  ☆15Feb 3, 2026Updated last week
• obophenotype / provisional_cell_ontology

  View on GitHub
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Jul 8, 2025Updated 7 months ago
• geneontology / helpdesk

  View on GitHub
  The Gene Ontology Helpdesk
  ☆16Jan 13, 2026Updated last month
• PlantPhenoOntology / ppo

  View on GitHub
  An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data acro…
  ☆18Jan 10, 2026Updated last month
• vaccineontology / VO

  View on GitHub
  Vaccine Ontology
  ☆18Jan 23, 2026Updated 3 weeks ago
• dnanexus-archive / dx-cwl

  View on GitHub
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Sep 12, 2018Updated 7 years ago
• MADICES / MADICES-2022

  View on GitHub
  This repository contains organizational notes and details for the CECAM MADICES workshop, 7th-9th February 2022.
  ☆13Feb 22, 2022Updated 3 years ago
• ISA-tools / Risa

  View on GitHub
  Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…
  ☆20Oct 17, 2018Updated 7 years ago
• Planteome / plant-stress-ontology

  View on GitHub
  An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Onto…
  ☆18Jan 26, 2026Updated 2 weeks ago
• PopulationAndCommunityOntology / pco

  View on GitHub
  An ontology about groups of interacting organisms such as populations and communities
  ☆17Oct 27, 2022Updated 3 years ago
• mgijax / mammalian-phenotype-ontology

  View on GitHub
  Standard terms for annotating mammalian phenotypic data
  ☆20Feb 4, 2026Updated last week
• arpcard / aro

  View on GitHub
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆21Oct 2, 2025Updated 4 months ago
• dhimmel / indications

  View on GitHub
  Processing high-throughput drug indication resources.
  ☆19Mar 15, 2016Updated 9 years ago
• NCI-Thesaurus / thesaurus-obo-edition

  View on GitHub
  OBO Library edition of NCIt
  ☆25Aug 6, 2025Updated 6 months ago
• bio-ontology-research-group / unit-ontology

  View on GitHub
  An ontology of units of measurements
  ☆23Jan 16, 2026Updated 3 weeks ago
• broadinstitute / gtex-single-nucleus-reference

  View on GitHub
  Code repository for the snRNA-seq cross-tissue atlas project
  ☆21Feb 22, 2022Updated 3 years ago
• obo-behavior / behavior-ontology

  View on GitHub
  Neuro Behaviour Ontology: an ontology for human and animal behaviour processes and behaviour phenotypes
  ☆26Jan 14, 2026Updated last month
• obophenotype / ncbitaxon

  View on GitHub
  Build for NCBITaxon
  ☆30Dec 14, 2025Updated 2 months ago
• egonw / rrdf

  View on GitHub
  R package for handling RDF data.
  ☆29Mar 26, 2018Updated 7 years ago
• biopragmatics / bioversions

  View on GitHub
  🪝 What's the latest version for each database?
  ☆28Updated this week
• EBISPOT / DUO

  View on GitHub
  Ontology for consent codes and data use requirements
  ☆67Sep 21, 2022Updated 3 years ago
• pimentel / atom-r-exec

  View on GitHub
  Send R code to various R consoles from the Atom editor
  ☆18Nov 12, 2017Updated 8 years ago
• blokhin / genealogical-trees

  View on GitHub
  Semantic Web Exercise: Reasoning and Visualization of the Genealogical Ontologies
  ☆31Jul 11, 2024Updated last year
• ontodev / robot

  View on GitHub
  ROBOT is an OBO Tool
  ☆296Oct 30, 2025Updated 3 months ago
• obophenotype / upheno

  View on GitHub
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆84Jan 14, 2026Updated last month
• biobuilds / biobuilds

  View on GitHub
  Curated collection of open-source bioinformatics tools
  ☆28Feb 5, 2019Updated 7 years ago
• dhimmel / integrate

  View on GitHub
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆33Sep 22, 2017Updated 8 years ago
• lambdamusic / Ontodocs

  View on GitHub
  [DISCONTINUED] Generate ontology documentation in HTML and Markdown. Quick and easy.
  ☆38Dec 18, 2018Updated 7 years ago
• obophenotype / human-phenotype-ontology

  View on GitHub
  Ontology for the description of human clinical features
  ☆334Updated this week
• OBOFoundry / purl.obolibrary.org

  View on GitHub
  A system for managing OBO PURLs
  ☆89Feb 3, 2026Updated last week
• Dowell-Lab / DAStk

  View on GitHub
  Differential ATAC-seq toolkit
  ☆28Dec 21, 2023Updated 2 years ago
• jitwxs / OJCrawler

  View on GitHub
  爬取各大OJ题目
  ☆10Aug 28, 2017Updated 8 years ago
• pachterlab / kallisto_paper_analysis

  View on GitHub
  Analysis from kallisto paper
  ☆32Feb 10, 2016Updated 10 years ago
• obophenotype / xenopus-phenotype-ontology

  View on GitHub
  XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevi…
  ☆11Jul 25, 2025Updated 6 months ago
• cole-trapnell-lab / sci-plex

  View on GitHub
  repository containing analysis scripts and auxiliary files
  ☆37Apr 9, 2020Updated 5 years ago
• dhimmel / obonet

  View on GitHub
  OBO-formatted ontologies → networkx (Python 3)
  ☆150Mar 26, 2025Updated 10 months ago
• OBOFoundry / COB

  View on GitHub
  An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
  ☆46Jan 26, 2026Updated 2 weeks ago
• fossgis / open-data

  View on GitHub
  Sammlung von offenen Daten die dem FOSSGIS e.V. zur Verfügung gestellt wurden
  ☆12Dec 15, 2022Updated 3 years ago
• HUPO-PSI / psi-mod-CV

  View on GitHub
  PSI-MOD ontology for modified and unmodified amino acid residues
  ☆14Jan 8, 2026Updated last month