lmtani / pumbaaLinks
Command-line interface for Cromwell server
☆18Updated this week
Alternatives and similar repositories for pumbaa
Users that are interested in pumbaa are comparing it to the libraries listed below
Sorting:
- using all the bits for echt rapid variant annotation and filtering☆152Updated 8 months ago
- Per-base per-nucleotide depth analysis☆141Updated 2 months ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 11 months ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- Learning the Sequence Alignment/Map format☆113Updated 4 months ago
- ☆123Updated 4 months ago
- Learning the Variant Call Format☆147Updated 4 months ago
- Copy number calling and variant classification using targeted short read sequencing☆140Updated 3 months ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- R tools for Agilent electrophoresis data☆46Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆131Updated last month
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31Updated last month
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 2 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆153Updated 4 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆174Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Cromwell/WDL wrapper for Python☆58Updated 2 years ago
- BigWig and BAM utilities☆99Updated last year
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated this week
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last week
- A tool for bigWig files.☆118Updated 7 years ago