A companion for the Cromwell Server
☆22Jul 7, 2026Updated this week
Alternatives and similar repositories for pumbaa
Users that are interested in pumbaa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cromwell/WDL wrapper for Python☆58Feb 13, 2026Updated 4 months ago
- repo for OBF community newsletter updates☆19Nov 18, 2025Updated 7 months ago
- A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.☆28Mar 22, 2026Updated 3 months ago
- Metagenomic pipeline managed by snakemake☆18Sep 18, 2024Updated last year
- The wanna-be-simplest command line arguments library for C++☆32Jan 2, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Dec 12, 2025Updated 6 months ago
- Warp Analysis Research Pipelines☆228Jul 2, 2026Updated last week
- Course notes and scripts from ASReml-R short course taught by Salvador Gezan at the USDA-ARS station in Miami, FL☆13Jun 22, 2016Updated 10 years ago
- ☆12Apr 17, 2024Updated 2 years ago
- Materials for "Programming with LLMs" at posit::conf(2025)☆26Sep 24, 2025Updated 9 months ago
- A collection of reusable WDL tasks. Category:Other☆89Apr 8, 2026Updated 3 months ago
- Notes and code from a network biology study group at UMD.☆10Apr 11, 2015Updated 11 years ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 7 months ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 9 months ago
- Quick Read Quality Control☆20Feb 28, 2023Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 7 months ago
- Statistical Computing☆11Jan 24, 2025Updated last year
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 2 years ago
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆23May 15, 2026Updated last month
- ☆23Jan 11, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated 3 months ago
- This repository contains all containers that WARP uses.☆15Jul 1, 2026Updated last week
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- Specification for the Workflow Description Language (WDL).☆856Jun 30, 2026Updated last week
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Jul 1, 2026Updated last week
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆23Sep 4, 2024Updated last year
- Containerized data analysis pipelines☆12Jun 13, 2018Updated 8 years ago
- Workflow Description Language developer tools & local runner☆202Jun 29, 2026Updated last week
- WDL plugin for pytest☆49Aug 1, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Mol* Volumes and Segmentations Extension☆12Mar 16, 2025Updated last year
- Bioinformatics for Benched Biologists☆21Apr 30, 2020Updated 6 years ago
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- Go wrapper around Docker Compose, useful for integration testing.☆17Mar 23, 2017Updated 9 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago