A companion for the Cromwell Server
☆20Apr 11, 2026Updated last week
Alternatives and similar repositories for pumbaa
Users that are interested in pumbaa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cromwell/WDL wrapper for Python☆58Feb 13, 2026Updated 2 months ago
- repo for OBF community newsletter updates☆19Nov 18, 2025Updated 5 months ago
- A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.☆27Mar 22, 2026Updated 3 weeks ago
- Metagenomic pipeline managed by snakemake☆18Sep 18, 2024Updated last year
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Dec 12, 2025Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Warp Analysis Research Pipelines☆225Updated this week
- Course notes and scripts from ASReml-R short course taught by Salvador Gezan at the USDA-ARS station in Miami, FL☆13Jun 22, 2016Updated 9 years ago
- ☆12Apr 17, 2024Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆89Apr 8, 2026Updated last week
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 4 months ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Oct 31, 2024Updated last year
- Quick Read Quality Control☆20Feb 28, 2023Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Statistical Computing☆11Jan 24, 2025Updated last year
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 2 years ago
- ☆23Jan 11, 2019Updated 7 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated 3 weeks ago
- This repository contains all containers that WARP uses.☆13Updated this week
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.☆22May 8, 2024Updated last year
- ☆25Feb 25, 2026Updated last month
- Specification for the Workflow Description Language (WDL).☆852Apr 8, 2026Updated last week
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 11 months ago
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆23Sep 4, 2024Updated last year
- Containerized data analysis pipelines☆12Jun 13, 2018Updated 7 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated 11 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Mol* Volumes and Segmentations Extension☆12Mar 16, 2025Updated last year
- ☆12Jul 4, 2022Updated 3 years ago
- Go wrapper around Docker Compose, useful for integration testing.☆17Mar 23, 2017Updated 9 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Rust fullstack application with yew, axum, seaorm and graphql☆10Jan 30, 2023Updated 3 years ago
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Jul 26, 2024Updated last year
- An open-source software package to power microbial genomic databases☆69Apr 12, 2026Updated last week
- ☆27Jun 5, 2025Updated 10 months ago
- Feature selection for preserving biological trajectories in single-cell data☆22May 29, 2025Updated 10 months ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago