A companion for the Cromwell Server
☆22Oct 6, 2026Updated last week
Alternatives and similar repositories for pumbaa
Users that are interested in pumbaa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cromwell/WDL wrapper for Python☆58Feb 13, 2026Updated 8 months ago
- repo for OBF community newsletter updates☆19Nov 18, 2025Updated 11 months ago
- Metagenomic pipeline managed by snakemake☆18Sep 18, 2024Updated 2 years ago
- Warp Analysis Research Pipelines☆232Updated this week
- A collection of reusable WDL tasks. Category:Other☆88Sep 29, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Apr 17, 2024Updated 2 years ago
- Notes and code from a network biology study group at UMD.☆10Apr 11, 2015Updated 11 years ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 10 months ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 11 months ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- WDL plugin for pytest☆49Aug 1, 2023Updated 3 years ago
- A DRAFT, early stage book on snakemake.☆25Nov 1, 2023Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- OpenMendel package for haplotyping and imputation☆26Oct 8, 2025Updated last year
- ☆24Feb 22, 2023Updated 3 years ago
- Statistical Computing☆11Jan 24, 2025Updated last year
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆24May 15, 2026Updated 5 months ago
- ☆23Jan 11, 2019Updated 7 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- A performant Kubernetes-based task executor for the Task Execution Service (TES) 1.1 specification.☆18Oct 7, 2026Updated last week
- Exploration of controlled loss of quality values for compressing CRAM files☆37Feb 23, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rich IDE support for Workflow Description Language☆42Mar 28, 2025Updated last year
- Workflow Description Language developer tools & local runner☆207Updated this week
- Specification for the Workflow Description Language (WDL).☆856Sep 14, 2026Updated last month
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- fast, reliable and handy demultiplexing tool for fastx files☆14Jul 9, 2026Updated 3 months ago
- horizontal pileup☆16Sep 1, 2026Updated last month
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆23Sep 4, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Jul 1, 2026Updated 3 months ago
- Mol* Volumes and Segmentations Extension☆12Mar 16, 2025Updated last year
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Bioinformatics for Benched Biologists☆21Apr 30, 2020Updated 6 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆26Sep 20, 2026Updated 3 weeks ago
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year