zephyrtronium / bwstLinks
Burrows-Wheeler-Scott transform
☆14Updated 12 years ago
Alternatives and similar repositories for bwst
Users that are interested in bwst are comparing it to the libraries listed below
Sorting:
- Dynamic succinct/compressed data structures☆111Updated last year
- ☆16Updated 11 years ago
- 🔶 Compressed bitvector/container supporting efficient random access and rank queries☆46Updated last year
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆64Updated last year
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆34Updated 8 months ago
- Bloom-filter based minimal perfect hash function library☆265Updated 2 months ago
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆36Updated 5 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆83Updated last year
- Succinct Data Structure Library 3.0☆95Updated last month
- Fast C functions for the computing the positional popcount (pospopcnt).☆55Updated 5 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- Fast C header-only library for popcnt, pospopcnt, and set algebraic operations☆45Updated 5 years ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆48Updated 4 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆154Updated last year
- Sample program for article "SIMD-ized searching in unique constant dictionary" (http://0x80.pl/articles/simd-search.html)☆52Updated 8 years ago
- Bit packed vector of integral values☆27Updated 7 months ago
- Compact Tree Representation☆16Updated 8 years ago
- testbed for different SIMD implementations for set intersection and set union☆41Updated 5 years ago
- Custom compression for CRAM and others.☆35Updated last week
- Compact Data Structures Library☆101Updated 3 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- compressed, queryable variation graphs☆11Updated 10 years ago
- Ultra fast MSD radix sorter☆11Updated 5 years ago
- FOundation of stXXl and thriLL☆14Updated last year
- msufsort parallel suffix array construction algorithm☆29Updated 4 years ago
- benchmarking positional population count☆15Updated last year
- Parallel Suffix Array, LCP Array, and Suffix Tree Construction☆49Updated 6 years ago
- Prefix Filter: Practically and Theoretically Better Than Bloom.☆48Updated 3 years ago