zephyrtronium / bwstLinks
Burrows-Wheeler-Scott transform
☆14Updated 12 years ago
Alternatives and similar repositories for bwst
Users that are interested in bwst are comparing it to the libraries listed below
Sorting:
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆64Updated last year
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- Fast C functions for the computing the positional popcount (pospopcnt).☆55Updated 5 years ago
- Dynamic succinct/compressed data structures☆113Updated last year
- 🔶 Compressed bitvector/container supporting efficient random access and rank queries☆46Updated 11 months ago
- A cheatsheet for most common Stringology tasks☆15Updated 4 years ago
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆35Updated 5 years ago
- ☆16Updated 11 years ago
- Extremely fast inplace radix sort☆42Updated 5 years ago
- Bit packed vector of integral values☆27Updated 6 months ago
- Compact Tree Representation☆16Updated 8 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆33Updated 6 months ago
- Fast C header-only library for popcnt, pospopcnt, and set algebraic operations☆45Updated 5 years ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆49Updated 4 years ago
- Ultra fast MSD radix sorter☆11Updated 5 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- A tool for merging large BWTs☆26Updated 4 years ago
- A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.☆19Updated 3 weeks ago
- Custom compression for CRAM and others.☆35Updated last month
- FOundation of stXXl and thriLL☆14Updated last year
- Compact Data Structures Library☆101Updated 3 years ago
- AVX512F and AVX2 versions of quick sort☆104Updated 7 years ago
- Bloom-filter based minimal perfect hash function library☆266Updated 3 weeks ago
- Sample program for article "SIMD-ized searching in unique constant dictionary" (http://0x80.pl/articles/simd-search.html)☆52Updated 8 years ago
- Relative data structures based on the BWT☆12Updated 7 years ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆27Updated 4 years ago
- Benchmark of four minimal perfect hash libraries (phf, emphf, CMPH, Sux4J)☆13Updated 8 years ago
- C library to compute the Hamming weight of arrays☆48Updated 6 years ago
- Parallel Lightweight Suffix Array Algorithm.☆18Updated 8 years ago