zephyrtronium / bwst

Related projects: ⓘ

• nicolaprezza / BWTIL
  BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
  ☆25Updated 2 years ago
• ot / emphf
  An efficient external-memory algorithm for the construction of minimal perfect hash functions
  ☆61Updated 3 months ago
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆14Updated 3 years ago
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆83Updated 7 months ago
• michaelmaniscalco / msufsort
  msufsort parallel suffix array construction algorithm
  ☆28Updated 3 years ago
• jlabeit / parallel-divsufsort
  Parallel Lightweight Suffix Array Algorithm.
  ☆17Updated 7 years ago
• fclaude / libcds2
  Compact Data Structures Library
  ☆97Updated 2 years ago
• Poyias / mBonsai
  Compact Tree Representation
  ☆16Updated 7 years ago
• jermp / sshash
  A compressed, associative, exact, and weighted dictionary for k-mers.
  ☆83Updated 2 weeks ago
• jltsiren / relative-fm
  Relative data structures based on the BWT
  ☆12Updated 6 years ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 3 years ago
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆57Updated last year
• attractivechaos / udb3
  ☆14Updated 3 months ago
• gmarcais / compact_vector
  Bit packed vector of integral values
  ☆25Updated last year
• pelotoncycle / bsort
  Extremely fast inplace radix sort
  ☆42Updated 4 years ago
• itomomoti / OnlineRlbwt
  Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.
  ☆14Updated 6 years ago
• xxsds / DYNAMIC
  Dynamic succinct/compressed data structures
  ☆111Updated 4 months ago
• GuillaumeHolley / BloomFilterTrie
  An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.
  ☆43Updated 2 years ago
• mpetri / FM-Index
  FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…
  ☆99Updated 9 years ago
• samtools / htscodecs
  Custom compression for CRAM and others.
  ☆27Updated 2 weeks ago
• migumar2 / uiHRDC
  Suite of universal indexes for Highly Repetitive Document Collections
  ☆19Updated 4 years ago
• bcgsc / btl_bloomfilter
  The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.
  ☆18Updated 2 years ago
• jts / dbgfm
  FM-index representation of a de Bruijn graph
  ☆27Updated 7 years ago
• mklarqvist / positional-popcount
  Fast C functions for the computing the positional popcount (pospopcnt).
  ☆52Updated 4 years ago
• waYne1337 / gsaca
  linear time suffix array construction algorithm
  ☆12Updated 7 years ago
• ips4o / ips2ra
  In-place Parallel Super Scalar Radix Sort (IPS²Ra)
  ☆29Updated 6 months ago
• ekg / succinct-graph
  compressed, queryable variation graphs
  ☆11Updated 9 years ago
• rantala / string-sorting
  A collection of string sorting algorithms
  ☆50Updated 2 years ago
• ekg / mmmulti
  memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort
  ☆27Updated 3 years ago
• gvinciguerra / la_vector
  🔶 Compressed bitvector/container supporting efficient random access and rank queries
  ☆40Updated 2 weeks ago