zephyrtronium / bwstLinks
Burrows-Wheeler-Scott transform
β14Updated 12 years ago
Alternatives and similar repositories for bwst
Users that are interested in bwst are comparing it to the libraries listed below
Sorting:
- Dynamic succinct/compressed data structuresβ112Updated last year
- πΆ Compressed bitvector/container supporting efficient random access and rank queriesβ46Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)β83Updated last year
- Wavelet tree based on a fixed block boosting techniqueβ16Updated 4 years ago
- Bit packed vector of integral valuesβ27Updated 9 months ago
- In-place Parallel Super Scalar Radix Sort (IPSΒ²Ra)β34Updated 9 months ago
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal paβ¦β36Updated 5 years ago
- A cheatsheet for most common Stringology tasksβ14Updated 4 years ago
- Fast C header-only library for popcnt, pospopcnt, and set algebraic operationsβ46Updated 5 years ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functionsβ64Updated last year
- Fast C functions for the computing the positional popcount (pospopcnt).β55Updated 5 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexesβ25Updated 3 years ago
- SetSketch: Filling the Gap between MinHash and HyperLogLogβ48Updated 4 years ago
- Bloom-filter based minimal perfect hash function libraryβ267Updated 3 months ago
- Extremely fast inplace radix sortβ42Updated 5 years ago
- Custom compression for CRAM and others.β36Updated 2 weeks ago
- β16Updated 11 years ago
- An optimal space run-length Burrows-Wheeler transform full-text indexβ65Updated 2 years ago
- msufsort parallel suffix array construction algorithmβ29Updated 4 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental rβ¦β107Updated 10 years ago
- The libsais library provides fast linear-time construction of suffix array (SA), generalized suffix array (GSA), longest common prefix (Lβ¦β226Updated last month
- Succinct Data Structure Library 3.0β95Updated 2 months ago
- A benchmark for sorting algorithmsβ62Updated 4 years ago
- A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.β20Updated last month
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.β14Updated 7 years ago
- Parallel Lightweight Suffix Array Algorithm.β18Updated 8 years ago
- Compact Tree Representationβ16Updated 8 years ago
- Ultra fast MSD radix sorterβ10Updated 5 years ago
- A collection of string sorting algorithmsβ55Updated 3 years ago
- Compact Data Structures Libraryβ101Updated 3 years ago