nlpie / biomedicus2Links
Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.
☆44Updated 2 years ago
Alternatives and similar repositories for biomedicus2
Users that are interested in biomedicus2 are comparing it to the libraries listed below
Sorting:
- Reach Biomedical Information Extraction☆98Updated last year
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- Basic Python 3 tools to interact with UMLS lexica☆124Updated 6 years ago
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 8 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆233Updated 5 years ago
- ☆98Updated 2 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 8 years ago
- Health NLP Examples☆89Updated 7 years ago
- An information extraction system for free-text eligibility criteria☆38Updated 6 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Updated 2 years ago
- NLP framework in python for entity recognition and relationship extraction☆115Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 3 months ago
- Public release of the DeepPhe analytic software☆30Updated 2 weeks ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆108Updated last year
- Clinical Language Annotation Modeling and Processing toolkit☆17Updated 9 years ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆47Updated 2 years ago
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- A near real-time named-entity recognizer☆62Updated 4 months ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated last year
- Negation detection NLP tool. If you use the code, please cite George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean,…☆54Updated 8 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- Open or Easy Access Clinical Data Sources for Biomedical Research☆176Updated 8 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- NLP pipeline using word2vec (preprocessing/embedding/prediction/clustering)☆116Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Clinical Pipeline Engine using Apache cTAKES☆24Updated 10 years ago
- Clinical Text Mining☆12Updated 8 years ago