spyysalo / pubmed
Tools for working with PubMed data.
☆16Updated 4 years ago
Alternatives and similar repositories for pubmed:
Users that are interested in pubmed are comparing it to the libraries listed below
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 5 years ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆47Updated 4 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 4 years ago
- Representation Learning of Entities and Documents from Knowledge Base Descriptions☆18Updated 6 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41Updated 4 years ago
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…☆37Updated 6 years ago
- ☆11Updated 5 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Updated 7 years ago
- ☆42Updated 5 years ago
- ☆11Updated 7 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Pipelines that combine different modules to perform relation extraction☆9Updated 5 years ago
- Given a pair of sentences (premise, hypothesis), the decomposed graph entailment model (DGEM) predicts whether the premise can be used to…☆52Updated 4 years ago
- OAQA Biomedical Question Answering (BioASQ) System☆38Updated 7 years ago
- ☆15Updated 6 years ago
- ☆15Updated 7 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Updated 5 years ago
- Datasets for Question Answering by Search and Reading☆69Updated 7 years ago
- ☆32Updated 5 years ago
- A generic library for crafting adversarial NLP examples - WIP☆40Updated 6 years ago
- Repository used to collect biomedical corpus on the Internet!☆32Updated 4 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Code for our ACL '20 paper "Representation Engineering with Natural Language Explanations"☆29Updated 4 years ago
- This released code is for our ACL2018 paper "End-Task Oriented Textual Entailment via Deep Explorations of Inter-Sentence Interactions". …☆15Updated 6 years ago
- Implementation for EACL 2021 paper "Scientific Discourse Tagging for Evidence Extraction".☆20Updated 3 years ago