Alternatives and similar repositories for biograkn

Users that are interested in biograkn are comparing it to the libraries listed below

• typedb / typedb-driver-examples

  View on GitHub
  TypeDB Driver Example Projects and Tutorials
  ☆86Oct 14, 2025Updated 4 months ago
• typedb / typedb-ml

  View on GitHub
  TypeDB-ML is the Machine Learning integrations library for TypeDB
  ☆552Nov 18, 2023Updated 2 years ago
• typedb-osi / typeql-plugin-vscode

  View on GitHub
  TypeQL plugin for Visual Studio Code
  ☆18Oct 30, 2025Updated 3 months ago
• taxfix / grakn_elixir

  View on GitHub
  Elixir client for Grakn database
  ☆15Jan 24, 2025Updated last year
• typedb / typeql

  View on GitHub
  TypeQL: Built for systems, not records
  ☆242Updated this week
• typedb-osi / typedb-loader

  View on GitHub
  TypeDB Loader - Data Migration Tool for TypeDB
  ☆63Mar 15, 2024Updated last year
• kbogas / medknow

  View on GitHub
  Medical Relations and Entities Extraction
  ☆37Jun 21, 2022Updated 3 years ago
• banjtheman / grakn-codex

  View on GitHub
  Create Grakn Databases with ease
  ☆16Feb 1, 2021Updated 5 years ago
• BFergerson / grakn-mythos

  View on GitHub
  Sharable Grakn knowledge graphs
  ☆14Dec 28, 2022Updated 3 years ago
• dterg / biomedical_corpora

  View on GitHub
  Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…
  ☆18Mar 15, 2018Updated 7 years ago
• p-koo / deepomics

  View on GitHub
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆22Feb 10, 2023Updated 3 years ago
• typedb / typedb-driver-python

  View on GitHub
  TypeDB Driver for Python
  ☆65Sep 27, 2023Updated 2 years ago
• Tian312 / EliIE

  View on GitHub
  An information extraction system for free-text eligibility criteria
  ☆38Jan 12, 2019Updated 7 years ago
• SmartDataAnalytics / BioKEEN

  View on GitHub
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Sep 7, 2022Updated 3 years ago
• NLPatVCU / medaCy

  View on GitHub
  Medical Text Mining and Information Extraction with spaCy
  ☆438Nov 1, 2022Updated 3 years ago
• greenelab / snorkeling

  View on GitHub
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Feb 1, 2021Updated 5 years ago
• CogStack / CogStack-SemEHR

  View on GitHub
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆88Jan 13, 2023Updated 3 years ago
• taliesins / typedb-client-go

  View on GitHub
  Grakn Go Client
  ☆16Apr 12, 2023Updated 2 years ago
• benchling / integration-examples

  View on GitHub
  Example usage of the Benchling API: https://docs.benchling.com/
  ☆35Jun 10, 2025Updated 8 months ago
• allenai / scispacy

  View on GitHub
  A full spaCy pipeline and models for scientific/biomedical documents.
  ☆1,921Dec 4, 2025Updated 2 months ago
• som-shahlab / trove

  View on GitHub
  Weakly supervised medical named entity classification
  ☆72Dec 23, 2022Updated 3 years ago
• natacourby / Disease_ontologies_for_knowledge_graphs

  View on GitHub
  Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referenc…
  ☆21Apr 16, 2021Updated 4 years ago
• samuelbroscheit / neural-profet

  View on GitHub
  ☆10Jun 17, 2024Updated last year
• wikipathways / pywikipathways

  View on GitHub
  Python Client Package for WikiPathways
  ☆23Dec 9, 2025Updated 2 months ago
• MannLabs / CKG

  View on GitHub
  Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…
  ☆580Sep 11, 2025Updated 5 months ago
• kormilitzin / med7

  View on GitHub
  ☆221Dec 11, 2024Updated last year
• gnn4dr / DRKG

  View on GitHub
  A knowledge graph and a set of tools for drug repurposing
  ☆670Apr 19, 2022Updated 3 years ago
• logicmoo / logicmoo_nlu

  View on GitHub
  LogicMOO Natural Language Understanding Kit Unified into Prolog
  ☆13Oct 2, 2021Updated 4 years ago
• jakelever / kindred

  View on GitHub
  A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
  ☆158Mar 12, 2023Updated 2 years ago
• patverga / bran

  View on GitHub
  Full abstract relation extraction from biological texts with bi-affine relation attention networks
  ☆131Jan 25, 2019Updated 7 years ago
• pyaf / parallel_mAP_evaluation

  View on GitHub
  This repo parallelizes mAP_evaluation using python's multiprocessing module.
  ☆18Apr 14, 2022Updated 3 years ago
• diffbot / knowledge-net

  View on GitHub
  KnowledgeNet: A Benchmark Dataset for Knowledge Base Population
  ☆270May 21, 2021Updated 4 years ago
• ConstantinoSchillebeeckx / parse_fda_drugs

  View on GitHub
  Parse the Drugs@FDA data into a postgres DB
  ☆10Dec 8, 2022Updated 3 years ago
• CategoricalData / FQL

  View on GitHub
  Archive of CQL's predecessor, by Patrick Schultz, David Spivak, and Ryan Wisnesky
  ☆13Aug 22, 2019Updated 6 years ago
• breck7 / pau

  View on GitHub
  Medical records you can copy and paste
  ☆12Mar 3, 2023Updated 2 years ago
• jakelever / biotext

  View on GitHub
  Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
  ☆14Jun 10, 2024Updated last year
• bitcrowd / bitcrowd_ecto

  View on GitHub
  A collection of useful additions to ecto we use in our projects.
  ☆12Jan 27, 2026Updated 2 weeks ago
• NikolayOskolkov / DeepLearningDataIntegration

  View on GitHub
  Here I show how to use Deep Learning for biological and biomedical Data Integration.
  ☆11Sep 17, 2020Updated 5 years ago
• omnia-md / omnia-md

  View on GitHub
  ☆12Jan 12, 2015Updated 11 years ago