jrfaulkner / spmrfLinks
R package for Bayesian nonparametric adaptive smoothing with Stan
☆9Updated 4 years ago
Alternatives and similar repositories for spmrf
Users that are interested in spmrf are comparing it to the libraries listed below
Sorting:
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- ☆10Updated 8 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated last year
- Infectious disease model library and utilities☆14Updated 2 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 3 months ago
- Some code for monkeypox☆10Updated 2 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Survival modelling via ODEs☆10Updated 3 months ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 5 months ago
- Presentation at the Joint Statistical Meetings 2021☆12Updated 3 years ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 3 years ago
- Examples on INLA within MCMC☆11Updated 8 years ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated 9 months ago
- ☆15Updated 4 years ago
- Create Contact Matrices from Population Data☆20Updated last month
- Course on nowcasting and forecasting of infectious disease dynamics☆19Updated this week
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Monte-Carlo State Space Models☆19Updated 11 months ago
- R package for estimating excess deaths from daily count data☆20Updated 2 months ago
- Data and statistical models for biomarker shedding.☆13Updated 2 weeks ago
- ☆12Updated 6 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆14Updated 4 months ago
- CRAN Task View: Epidemiology☆22Updated this week
- Estimate epidemiological delay distributions with brms☆15Updated last month
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 8 months ago