Alternatives and similar repositories for excessmort

Users that are interested in excessmort are comparing it to the libraries listed below

• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated 2 years ago
• mrc-ide / reactidd
  This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…
  ☆17Updated last year
• idem-lab / conmat
  Create Contact Matrices from Population Data
  ☆20Updated last week
• ekenah / TranStat
  An R package for the analysis of infectious disease transmission data
  ☆10Updated 4 years ago
• thibautjombart / OutbreakTools
  Basic Tools for the Analysis of Disease Outbreaks
  ☆12Updated 6 years ago
• mhoehle / STA427_SM4IDE
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆20Updated 3 years ago
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆17Updated last year
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 4 years ago
• covid-19-Re / estimateR
  R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic
  ☆11Updated last year
• covid19br / nowcaster
  Repository to the R package nowcaster, nowcasting with INLA
  ☆22Updated 2 months ago
• CADDE-CENTRE / Novel-SARS-CoV-2-P1-Lineage-in-Brazil
  ☆19Updated 4 years ago
• kbubar / vaccine_prioritization
  ☆17Updated 4 years ago
• cran-task-views / Epidemiology
  CRAN Task View: Epidemiology
  ☆24Updated last month
• nicholasdavies / newcovid
  ☆27Updated 4 years ago
• objornstad / oshinys
  EcoEpi shinyApps
  ☆18Updated 6 years ago
• nfidd / nfidd
  Course on nowcasting and forecasting of infectious disease dynamics
  ☆21Updated last week
• oswaldogressani / EpiLPS
  A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.
  ☆20Updated 2 months ago
• seabbs / idmodelr
  Infectious disease model library and utilities
  ☆15Updated 3 years ago
• charlesm93 / disease_transmission_workflow
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆28Updated 4 years ago
• anuopensci / emend
  Standarise data with an AI assistant
  ☆17Updated 7 months ago
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆23Updated this week
• mrc-ide / mcstate
  Monte-Carlo State Space Models
  ☆19Updated last year
• blasern / rdist
  An R package to calculate pairwise distances
  ☆17Updated 2 years ago
• epinowcast / epinowcast
  A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…
  ☆62Updated last week
• alex1770 / Covid-19
  Covid-19 epidemiology - data and analysis
  ☆11Updated last year
• adamkucharski / 2020-cov-tracing
  Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…
  ☆13Updated 2 years ago
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆42Updated 3 months ago
• athowes / thesis
  Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)
  ☆16Updated last week
• nicholasjclark / portal_VAR
  R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…
  ☆14Updated 9 months ago
• lsbastos / Delay
  Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.
  ☆16Updated 6 years ago