Stress-based Graph Drawing by Stochastic Gradient Descent
☆50Nov 22, 2022Updated 3 years ago
Alternatives and similar repositories for s_gd2
Users that are interested in s_gd2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- A high-performance modern set of graph rendering components, which enables users to visualize large graph datasets on the web.☆17Nov 20, 2025Updated 10 months ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- A declarative grammar that supports various technology stacks of AntV.☆13Apr 26, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- generating hardware accelerators for pangenomic graph queries☆45Jul 1, 2026Updated 3 months ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Index calculations for balanced binary search trees in in-order layout☆10Apr 28, 2014Updated 12 years ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆12Jan 26, 2022Updated 4 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- Optimized sequence graph implementations for graph genomics☆36Oct 6, 2026Updated last week
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- connect to a cisco anyconnect server with 2FA via web SSO on a headless server☆20Apr 13, 2021Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last month
- High Performance Sorting Based Distributed memory K-mer counter☆15Dec 8, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- std::map/std::set implementation using the adaptive radix tree☆15Jun 13, 2026Updated 4 months ago
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆19May 10, 2023Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated last month
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The PanGenome Graph Builder☆17Jul 17, 2024Updated 2 years ago
- A JavaScript implementation of Bubble Sets.☆52Sep 25, 2026Updated 2 weeks ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- 👨🎨 A stylesheet base coat for most html and forms☆20Oct 1, 2026Updated last week
- (PLEASE USE https://github.com/HanKruiger/tsNET) This is here for historical purpose only.☆10Mar 10, 2019Updated 7 years ago
- Hey, I bring my coffee with me. Here's what I use.☆15Mar 21, 2018Updated 8 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago