martin-steinegger / setcover
linear (time,space) greedy set cover implementation
☆30Updated 3 years ago
Alternatives and similar repositories for setcover:
Users that are interested in setcover are comparing it to the libraries listed below
- DartMinHash: Fast Sketching for Weighted Sets☆13Updated 4 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12Updated 12 years ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- ☆20Updated 4 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- External memory suffix array construction using inducing☆11Updated 4 years ago
- ☆10Updated 2 years ago
- A cheatsheet for most common Stringology tasks☆15Updated 4 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆64Updated last year
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.☆19Updated last month
- feedback vertex set solver☆11Updated 6 years ago
- ☆13Updated 5 years ago
- TreeMinHash: Fast Sketching for Weighted Jaccard Similarity Estimation☆14Updated 2 years ago
- Extremely fast inplace radix sort☆42Updated 5 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 3 years ago
- FOundation of stXXl and thriLL☆14Updated last year
- Metagenomic binning using low-density hashing a support vector machine☆21Updated 4 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆42Updated 4 years ago
- Simple swig bindings for the GNU Linear Programming Kit☆28Updated last week
- ☆12Updated last year
- Temporal Pathway Synthesizer☆17Updated 10 months ago
- Relative data structures based on the BWT☆12Updated 7 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆13Updated 3 weeks ago