Text mining for pharmacogenomic associations for PharmGKB
☆27Nov 4, 2022Updated 3 years ago
Alternatives and similar repositories for pgxmine
Users that are interested in pgxmine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- ☆11Dec 16, 2024Updated last year
- Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.☆12Jun 26, 2024Updated last year
- ☆10Oct 18, 2021Updated 4 years ago
- Parse full text XML documents from Pubmed Central☆36Dec 9, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- CollaboNet for Biomedical Named Entity Recognition☆48Feb 5, 2019Updated 7 years ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆62May 2, 2026Updated last week
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆18Jul 31, 2019Updated 6 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Jan 21, 2020Updated 6 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆28Aug 21, 2024Updated last year
- ☆13Apr 30, 2026Updated last week
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Text mining cancer biomarkers for the CIVIC database☆23Dec 16, 2025Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A package for uncertainty estimation with PyTorch☆12Aug 26, 2021Updated 4 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 8 years ago
- ☆10Mar 24, 2025Updated last year
- ☆11Nov 16, 2019Updated 6 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 11 months ago
- ☆10Jun 16, 2021Updated 4 years ago
- Python package for matrix storage and operations on hetnets☆14Mar 30, 2023Updated 3 years ago
- ☆13Dec 2, 2024Updated last year
- Japanese Entity Linker.☆12Jul 25, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Knowledge Graph Embeddings including TransE, TransH, TransR and PTransE☆14May 3, 2018Updated 8 years ago
- Literature mining for T cell relations☆23Aug 5, 2022Updated 3 years ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆18Jun 21, 2024Updated last year
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated 2 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- Transforming SemRep Predications into an Open Biomedical Linked Data Resource☆11Jan 26, 2018Updated 8 years ago
- Ａ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Oct 27, 2022Updated 3 years ago
- ☆12May 20, 2022Updated 3 years ago
- A bot to add citation data from OpenCitations to Wikidata☆12May 23, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Utilizing graphical neural networks and embeddings on a medical database KEGG to perform link predictions and drug similarity systems.☆17Oct 2, 2021Updated 4 years ago
- Benchmarking of CNV calling tools☆18May 18, 2019Updated 6 years ago
- For BioHackathon Europe 2021.☆30Nov 18, 2022Updated 3 years ago
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 4 years ago
- ☆15Sep 16, 2019Updated 6 years ago
- PGxPOP☆18Jan 25, 2023Updated 3 years ago
- A Standard Database for Drug Repositioning☆19Jul 28, 2017Updated 8 years ago