jakelever / pgxmine
Text mining for pharmacogenomic associations for PharmGKB
☆26Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for pgxmine
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆23Updated 3 months ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆13Updated 5 months ago
- Associations of genomic features, drugs and diseases☆48Updated last year
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆40Updated last year
- Retrieve and process PubTator annotations☆43Updated last year
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆44Updated 3 months ago
- Text mining cancer biomarkers for the CIVIC database☆22Updated last year
- A combined deep learning tool for automated recognition of human phenotype ontology☆20Updated last year
- Github repo for the Experimental Factor Ontology (EFO)☆57Updated this week
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆50Updated 2 weeks ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆33Updated this week
- PhenoTagger☆54Updated 9 months ago
- Repository for the GA4GH phenopacket schema☆78Updated 2 months ago
- ☆23Updated 3 years ago
- ☆21Updated last year
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆13Updated last year
- A metadata commons to store research software metadata☆40Updated this week
- Python library for extracting HPO encoded phenotypes from text☆27Updated 6 months ago
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 4 months ago
- ☆40Updated 4 years ago
- Map your disease and phenotype terms to the Open Targets platform ontology☆20Updated 2 months ago
- An information model for representing variant annotations.☆17Updated this week
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated 4 months ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆36Updated last year
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆24Updated 4 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆34Updated 2 years ago
- ☆13Updated 5 years ago
- Official repository for GDC User Guides in Markdown format☆60Updated this week