hms-dbmi / exac_browser
Browser for ExAC consortium data
☆12Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for exac_browser
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- Burden testing against public controls☆50Updated 8 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆49Updated 5 months ago
- Exon-exon splice junctions across SRA☆39Updated 3 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 2 weeks ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- ☆24Updated 5 months ago
- create a gemini-compatible database from a VCF☆56Updated 3 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆19Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- ☆67Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Clinical interpretation of somatic mutations in cancer☆42Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Identifying recurrent mutations in cancer☆37Updated 3 years ago
- Sanity check Variant Call Format (VCF) files.☆35Updated 8 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ☆33Updated 2 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- 3D hotspot mutation proximity analysis tool☆45Updated last year
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆24Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 4 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆18Updated 7 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year