AbigailMcGovern / iterseg
napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)
☆9Updated 10 months ago
Alternatives and similar repositories for iterseg:
Users that are interested in iterseg are comparing it to the libraries listed below
- A napari plugin to view and edit metadata☆10Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 5 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- ☆13Updated 4 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆15Updated 7 months ago
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 2 months ago
- ilastik plugin for napari☆14Updated 10 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- ☆15Updated 2 years ago
- Annotate microscopy images for CNN classifier☆11Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- A 3D interactivity toolbox for napari☆33Updated 2 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- ☆10Updated 6 months ago
- Repository for teaching and instruction purposes☆9Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 4 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated 2 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- ☆21Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Python libraries for loading, running and packaging bioimage.io models☆29Updated last week
- python tools for BigDataViewer☆21Updated last month
- A minimal Python package for reading OME-Zarr (meta)data☆17Updated this week